genome.fa.s4440.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004440.1 Hibiscus syriacus cultivar Beakdansim tig00009740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59226

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1910--1950	22	2.0	21	90	9	66	53	0	9	36	1.34
1917--1983	24	2.9	23	82	6	73	55	0	2	41	1.15
1939--1983	24	1.9	24	90	4	74	57	0	0	42	0.98
6127--6165	5	7.6	5	82	5	51	46	0	17	35	1.49
8620--8646	14	1.9	14	100	0	54	29	18	0	51	1.46
10006--10055	24	2.1	24	85	7	66	60	14	2	24	1.45
18809--18858	24	2.1	24	85	7	66	60	14	2	24	1.45
19033--19081	25	2.0	25	84	4	64	12	40	18	28	1.86
20800--20852	27	2.0	27	84	0	70	45	5	9	39	1.60
20905--20976	3	24.0	3	85	0	99	40	0	0	59	0.97
20933--20998	9	7.2	9	81	6	53	46	1	0	51	1.10
33705--33763	7	8.0	7	83	16	75	81	0	18	0	0.69
33701--33760	30	2.0	30	96	0	111	78	0	21	0	0.75
34812--35107	83	3.5	82	89	2	448	27	14	21	36	1.92
35832--36614	113	7.0	112	90	2	1141	36	14	18	30	1.91
36833--36897	3	23.0	3	74	12	57	43	0	0	56	0.99
36833--36897	17	3.7	17	72	22	62	43	0	0	56	0.99
37018--37063	19	2.4	19	88	0	65	15	45	19	19	1.85
39210--39247	20	1.9	20	88	0	58	23	21	26	28	1.99
39350--39437	42	2.2	40	85	4	113	39	13	18	28	1.88
39350--39437	20	4.3	20	82	5	104	39	13	18	28	1.88
48106--48164	10	5.7	10	75	15	57	55	18	11	13	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48115--48159	16	2.8	16	86	0	72	55	20	11	13	1.68
49199--49230	14	2.3	14	100	0	64	50	28	15	6	1.68
51192--51238	13	3.5	13	78	16	60	44	2	8	44	1.46
51205--51252	14	3.5	14	75	16	55	43	6	10	39	1.64
51190--51255	27	2.4	27	97	0	123	45	4	10	39	1.59
51482--51523	16	2.7	16	85	3	59	38	11	21	28	1.89

Tables:   1

The End!