Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004441.1 Hibiscus syriacus cultivar Beakdansim tig00009741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39720

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49--618
280
2.0
285
93
5
985
34
16
17
31
1.92
1383--1477
23
4.4
21
75
11
70
28
26
21
24
1.99
1383--1454
21
3.5
20
79
9
65
29
26
20
23
1.99
1382--1477
44
2.2
42
83
7
122
29
26
20
23
1.99
1401--1500
43
2.3
42
78
8
103
28
26
24
22
1.99
2992--3035
21
2.1
21
82
0
52
9
38
15
36
1.80
3367--3395
14
2.0
15
93
6
51
6
3
27
62
1.37
14112--14161
12
4.2
12
78
14
50
54
30
2
14
1.51
17141--17202
27
2.3
27
80
2
72
24
14
45
16
1.84
18951--18983
14
2.3
15
94
5
59
54
6
3
36
1.41
20187--20226
16
2.5
16
100
0
80
5
25
32
37
1.77
20309--20400
3
32.0
3
81
14
90
70
0
1
28
0.94
20309--20388
36
2.2
38
88
8
121
68
0
1
30
0.97
20361--20397
7
5.0
7
90
9
56
81
0
0
18
0.70
20313--20410
19
5.1
18
78
17
83
72
0
2
25
0.95
20332--20408
6
14.4
5
77
20
52
74
0
2
23
0.95
20753--21332
123
4.7
123
93
0
975
25
20
15
38
1.92
21371--21570
36
5.5
35
66
7
105
39
12
19
29
1.88
21353--21570
73
3.0
73
88
1
321
37
12
19
30
1.89
21389--21570
37
5.0
37
66
5
129
39
10
19
30
1.86
22308--22362
22
2.5
22
96
0
101
36
14
12
36
1.84
28232--28283
15
3.7
15
77
15
65
55
11
15
17
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30502--30536
18
1.9
18
88
11
54
71
0
0
28
0.86
32339--32379
18
2.3
18
91
0
64
85
2
4
7
0.81
32345--32380
18
2.0
18
100
0
72
83
5
5
5
0.91
34394--34434
20
2.0
20
86
9
57
17
2
7
73
1.17
35906--35952
18
2.7
17
83
3
58
27
29
6
36
1.82

Tables:   1

The End!