Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004442.1 Hibiscus syriacus cultivar Beakdansim tig00009742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74356

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3407--3468
33
1.9
31
83
6
79
53
8
0
38
1.31
3818--3883
17
3.9
17
100
0
132
28
10
12
48
1.74
6379--6573
63
2.9
67
74
16
181
44
8
5
41
1.58
10736--10769
5
6.8
5
87
12
52
79
0
2
17
0.86
11204--11242
21
1.9
20
84
5
51
46
2
0
51
1.14
22845--22904
25
2.4
25
88
0
75
33
13
15
38
1.86
23326--23392
6
11.5
6
91
1
102
31
50
14
2
1.58
33426--33484
29
2.0
29
100
0
118
49
13
13
23
1.78
38096--38154
29
2.0
29
100
0
118
49
13
13
23
1.78
40107--40171
33
2.0
33
84
0
85
32
9
29
29
1.88
43300--43433
31
4.3
31
90
3
189
41
14
5
37
1.71
48113--48184
37
1.9
37
94
0
126
38
20
15
25
1.92
57152--57210
27
2.3
26
80
19
70
74
1
10
13
1.14
63195--63253
27
2.3
26
80
19
70
74
1
10
13
1.14
69958--70013
21
2.7
21
81
15
64
44
0
3
51
1.18

Tables:   1

The End!