Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004443.1 Hibiscus syriacus cultivar Beakdansim tig00009743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45757

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2185--2209
3
8.3
3
100
0
50
68
0
0
32
0.90
4185--4255
31
2.2
33
78
9
76
46
4
9
39
1.57
6370--6409
21
1.9
21
89
0
62
7
32
35
25
1.84
6363--6420
21
2.8
21
81
0
53
10
29
36
24
1.88
7331--7381
3
17.0
3
80
8
59
33
1
0
64
1.05
8787--8831
14
3.1
14
81
18
56
28
2
2
66
1.15
9745--9795
24
2.1
24
100
0
102
31
0
3
64
1.11
14444--14468
9
2.8
9
100
0
50
84
0
0
16
0.63
17839--18238
198
2.0
198
96
0
728
24
20
20
35
1.96
18729--18832
54
1.9
54
88
0
154
35
13
22
28
1.92
19587--20149
113
5.0
113
86
3
803
36
14
19
28
1.91
19585--20149
226
2.5
227
93
0
954
36
14
19
29
1.91
20577--20642
3
23.0
3
79
11
68
33
1
0
65
1.02
25014--25051
18
2.1
18
90
0
58
26
18
7
47
1.76
25050--25083
15
2.3
15
100
0
68
26
14
14
44
1.84
26726--26756
15
2.1
15
93
0
53
45
0
0
54
0.99
27256--27297
5
8.2
5
80
15
50
21
4
0
73
1.01
27622--27731
3
36.7
3
92
0
184
34
2
0
62
1.09
29133--29173
20
2.0
21
85
4
57
36
2
2
58
1.24
29869--29919
18
2.9
17
72
18
50
25
0
1
72
0.95
29910--29946
15
2.7
15
88
12
53
24
5
8
62
1.44
33256--33287
15
2.2
15
94
5
57
46
6
3
43
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40548--40597
1
50.0
1
79
0
55
90
0
10
0
0.47
40545--40598
10
5.3
10
85
12
74
87
0
12
0
0.56
40551--40598
7
7.0
7
84
13
64
87
0
12
0
0.54
40548--40597
11
4.5
11
88
11
75
90
0
10
0
0.47
40545--40598
21
2.6
21
86
11
76
87
0
12
0
0.56
40931--40972
19
2.2
20
91
4
68
30
4
11
52
1.59
41741--42031
83
3.5
83
93
2
478
28
15
19
36
1.92
42682--43351
113
5.9
112
85
5
803
36
12
20
30
1.90
43663--43759
3
33.7
3
87
8
148
35
2
0
62
1.07
43663--43759
23
4.2
23
93
4
144
35
2
0
62
1.07
45122--45163
19
2.2
20
86
4
59
38
2
2
57
1.25

Tables:   1

The End!