genome.fa.s4444.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004444.1 Hibiscus syriacus cultivar Beakdansim tig00009753_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69487

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6330--6584	82	3.2	82	78	5	261	30	19	15	34	1.93
6631--6663	16	2.0	17	88	5	50	36	24	0	39	1.56
7665--7708	13	3.5	13	78	12	56	29	20	20	29	1.98
7686--7917	84	2.8	84	81	5	267	31	20	16	31	1.95
7950--7974	2	12.5	2	100	0	50	48	0	0	52	1.00
10375--10451	25	3.0	25	66	11	66	3	38	6	50	1.47
14266--14321	15	3.7	15	85	2	67	10	21	8	58	1.58
23845--23892	23	2.0	24	84	4	62	29	20	14	35	1.93
23852--23905	24	2.3	23	87	3	72	27	20	16	35	1.94
24174--24220	17	2.7	18	80	6	60	55	2	19	23	1.54
25356--25406	12	4.3	12	76	18	54	31	0	1	66	1.03
25419--25520	14	7.8	14	71	17	69	42	0	1	55	1.11
25419--25520	28	3.4	28	72	17	105	42	0	1	55	1.11
25368--25521	63	2.5	63	94	3	269	40	0	1	56	1.15
25493--25543	20	2.6	20	84	3	59	41	1	1	54	1.22
25516--25577	18	3.2	20	78	19	62	37	1	0	61	1.06
26043--26102	31	1.9	31	93	0	102	43	10	6	40	1.64
27202--27252	2	25.5	2	100	0	102	49	0	0	50	1.00
27371--27396	2	13.0	2	100	0	52	50	0	0	50	1.00
28798--28841	20	2.2	21	84	8	56	36	2	4	56	1.32
28908--28962	26	2.2	24	81	15	60	65	0	0	34	0.93
29013--29063	22	2.5	20	90	9	84	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29016--29073	23	2.6	23	97	2	109	63	0	0	36	0.94
29033--29073	13	3.4	13	74	19	52	65	0	0	34	0.93
35900--35947	21	2.3	20	82	6	60	12	12	8	66	1.44
37306--37351	17	2.8	17	80	9	51	73	2	8	15	1.16
44203--44305	30	3.4	30	93	0	170	23	19	24	33	1.97
47708--47868	64	2.5	63	81	5	180	31	19	24	24	1.98
47837--47913	20	3.7	20	77	14	75	27	23	24	24	2.00
49024--49126	30	3.4	30	86	0	143	24	19	21	34	1.96
51521--51591	27	2.6	27	73	4	72	30	9	14	45	1.77
52861--52925	24	2.7	24	85	4	96	30	24	20	24	1.98
52864--52939	24	3.2	24	80	10	84	31	21	21	26	1.98
53044--53095	15	3.5	15	72	0	50	38	23	7	30	1.83
53564--53621	20	2.9	20	71	0	53	32	18	12	36	1.88
59807--59904	49	2.0	49	86	2	135	28	20	26	24	1.99
59807--59904	24	4.0	24	90	2	133	28	20	26	24	1.99
65897--65947	26	2.0	26	84	7	68	56	0	0	43	0.99
66013--66052	2	20.5	2	89	5	64	50	2	0	47	1.14
67230--67273	24	1.9	24	86	9	65	27	0	0	72	0.85

Tables:   1

The End!