genome.fa.s4445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004445.1 Hibiscus syriacus cultivar Beakdansim tig00009754_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142015

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098--1149	21	2.5	21	90	3	79	50	23	15	11	1.76
1162--1203	14	3.0	14	85	0	57	45	21	21	11	1.84
1596--1653	22	2.6	22	91	0	98	17	18	44	18	1.87
1822--1865	20	2.2	20	87	0	61	29	18	25	27	1.98
1853--1927	21	3.6	21	68	10	55	25	17	18	38	1.92
1833--1948	41	2.8	41	80	0	142	26	16	21	35	1.94
1833--1983	82	1.8	82	81	5	189	27	17	19	36	1.94
1956--2028	21	3.5	20	77	5	74	30	19	21	28	1.98
2494--2597	45	2.3	45	94	0	181	34	10	25	28	1.90
2964--3003	16	2.5	16	84	12	55	30	17	7	45	1.76
3135--3190	23	2.4	23	82	14	62	57	0	3	39	1.16
3587--3617	15	2.1	15	93	0	53	38	0	9	51	1.35
3994--4045	7	7.4	7	86	0	68	19	0	34	46	1.50
4129--4177	21	2.3	21	89	6	73	42	2	6	48	1.39
4141--4193	20	2.7	20	82	5	63	37	7	9	45	1.65
4470--4494	13	1.9	13	100	0	50	44	32	8	16	1.76
4639--4697	15	4.2	15	80	12	63	40	0	8	50	1.33
4648--4697	2	24.5	2	83	4	55	42	0	8	50	1.32
4828--5037	2	107.0	2	74	14	179	46	3	1	48	1.29
4982--5015	15	2.3	15	94	0	59	41	2	5	50	1.42
5378--5413	12	3.0	12	87	0	54	55	2	0	41	1.14
6022--6075	2	27.5	2	96	3	101	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6073--6138	24	2.9	22	80	10	69	34	6	7	51	1.55
6159--6212	18	3.1	18	86	7	67	48	1	5	44	1.37
8196--8339	60	2.4	60	77	4	148	48	1	13	36	1.51
12623--12699	37	2.1	37	85	0	100	29	25	9	35	1.87
13428--13480	9	5.6	9	81	18	63	32	0	0	67	0.91
13428--13483	21	2.7	21	94	5	96	32	0	0	67	0.91
13435--13480	12	3.6	12	86	13	65	32	0	0	67	0.91
15305--15352	25	2.0	24	83	4	60	25	4	8	62	1.41
18491--18531	20	2.0	20	100	0	82	29	19	14	36	1.92
19131--19232	10	10.0	10	71	18	50	78	12	7	0	1.01
19156--19217	6	10.3	6	94	0	106	82	14	3	0	0.80
19127--19236	18	6.2	18	77	13	86	78	12	8	0	1.01
20432--20574	2	71.5	2	100	0	286	50	49	0	0	1.00
20798--20923	35	3.4	37	82	8	159	34	14	12	38	1.84
21487--21551	33	2.0	33	84	0	85	26	21	15	36	1.93
21611--21728	63	1.9	60	83	11	150	29	12	13	44	1.81
21717--21797	30	2.7	30	82	0	90	29	19	12	38	1.89
22374--22450	27	2.6	31	75	19	76	28	12	14	44	1.82
22471--22570	40	2.5	40	81	6	121	25	31	20	24	1.98
22503--22676	94	1.9	93	88	1	267	25	31	18	24	1.98
22595--22907	135	2.3	134	89	4	479	25	32	17	24	1.97
22597--22796	43	4.5	43	68	18	106	24	34	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23100--23152	9	5.6	9	81	18	63	32	0	0	67	0.91
23100--23155	21	2.7	21	94	5	96	32	0	0	67	0.91
23107--23152	12	3.6	12	86	13	65	32	0	0	67	0.91
24991--25038	25	2.0	24	83	4	60	25	4	8	62	1.41
28678--28711	17	2.0	17	88	0	50	35	0	17	47	1.48
30294--30346	23	2.2	24	83	13	72	54	1	0	43	1.11
30302--30346	23	2.0	23	91	8	74	51	2	0	46	1.13
32745--32792	19	2.5	20	86	3	62	47	6	14	31	1.69
34162--34227	20	3.3	20	68	16	64	31	24	15	28	1.95
34139--34232	40	2.3	40	94	0	161	30	22	12	34	1.91
35276--35305	2	14.5	2	93	6	51	50	0	3	46	1.18
42325--42366	16	2.7	16	96	3	77	61	4	19	14	1.49
47004--47061	3	19.0	3	82	10	73	34	0	0	65	0.93
47140--47191	22	2.4	22	96	0	95	30	42	21	5	1.76
48300--48340	13	3.2	13	77	16	50	34	4	0	60	1.18
50003--50343	170	2.0	171	99	0	675	36	18	22	22	1.95
59576--59646	12	6.4	11	79	8	81	83	0	16	0	0.66
59577--59647	21	3.6	19	80	14	81	81	0	18	0	0.69
60799--61186	83	4.6	83	92	2	605	26	12	21	38	1.90
61563--61667	52	2.0	52	100	0	210	36	13	17	33	1.88
61967--62755	113	7.0	113	94	0	1321	36	16	18	28	1.93
62792--62857	36	1.9	35	81	9	82	43	12	22	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62663--62962	120	2.5	123	80	9	339	40	15	20	25	1.90
63100--63157	3	19.0	3	82	10	73	34	0	0	65	0.93
71376--71441	30	2.2	30	81	10	82	36	12	3	48	1.56
71538--71663	31	4.3	31	70	18	110	35	6	1	56	1.34
71551--71606	25	2.2	25	90	0	85	37	5	1	55	1.33
75409--75434	5	5.2	5	100	0	52	80	0	0	19	0.71
76901--76945	24	1.9	24	82	13	58	68	0	0	31	0.89
77151--77818	134	5.0	134	84	2	806	29	16	21	31	1.96
77149--77818	267	2.5	268	83	5	874	29	16	21	31	1.96
80052--80108	27	2.1	28	83	3	71	42	8	8	40	1.67
82079--82115	11	3.4	11	84	0	56	40	8	24	27	1.83
86188--86242	23	2.3	25	81	6	69	61	10	16	10	1.55
86229--86282	10	5.3	10	82	12	56	79	1	16	1	0.91
86236--86274	15	2.5	15	91	4	60	82	2	15	0	0.79
90098--90147	21	2.4	21	100	0	100	24	20	14	42	1.88
92452--92753	131	2.3	131	76	4	295	39	16	9	33	1.82
93489--93526	3	12.7	3	100	0	76	65	0	0	34	0.93
95894--95933	21	1.9	21	89	0	62	57	5	7	30	1.48
99708--99768	23	2.7	22	85	5	77	19	32	18	29	1.95
102000--102068	21	3.3	21	97	0	129	36	0	42	21	1.53
103553--103578	9	2.9	9	100	0	52	69	0	19	11	1.18
104034--104067	16	2.2	16	89	5	52	50	2	8	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106265--106406	40	3.5	40	67	17	110	26	17	15	40	1.89
106244--106406	84	1.9	84	92	0	272	26	16	17	39	1.91
106714--106816	40	2.6	40	84	0	125	24	25	16	33	1.96
106380--106957	264	2.2	264	79	4	628	25	19	20	34	1.96
107299--107438	45	3.1	43	74	15	124	43	17	16	22	1.87
110494--110531	20	1.9	20	94	0	67	73	10	2	13	1.19
111756--111813	29	2.0	29	96	0	107	62	15	5	17	1.50
112053--112097	19	2.3	20	96	3	83	6	35	13	44	1.70
114874--114907	12	2.8	12	95	0	59	11	26	44	17	1.83
114873--114918	12	3.8	11	86	11	56	13	21	45	19	1.84
114870--114923	24	2.2	25	87	9	76	11	24	48	16	1.79
117983--118023	21	1.9	22	85	5	57	34	2	7	56	1.40
119952--120108	65	2.4	65	82	7	169	28	19	23	29	1.98
131651--131675	13	1.9	13	100	0	50	80	0	8	12	0.92
137413--137457	20	2.2	20	92	0	72	31	22	13	33	1.92
137421--137463	20	2.2	20	95	0	77	32	20	11	34	1.89
139366--139409	20	2.2	20	84	8	54	29	13	22	34	1.93

Tables:   1

The End!