genome.fa.s4447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004447.1 Hibiscus syriacus cultivar Beakdansim tig00009766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86919

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8533--8875	137	2.5	136	85	3	433	29	12	12	44	1.80
17608--17739	46	2.9	47	86	2	169	27	12	21	37	1.90
18774--18924	72	2.1	72	92	0	248	37	12	26	23	1.91
23574--23675	36	2.8	37	80	7	118	36	20	17	25	1.94
23576--23707	37	3.6	37	78	9	110	34	21	19	25	1.97
24068--24202	54	2.5	54	93	0	234	36	18	25	20	1.95
24180--24754	55	10.8	54	78	11	500	29	15	24	30	1.95
24180--24754	157	3.6	156	84	6	662	29	15	24	30	1.95
29110--29156	24	1.9	25	86	4	69	38	10	21	29	1.87
29109--29162	24	2.2	25	80	3	65	44	9	20	25	1.81
29627--29654	9	3.1	9	100	0	56	25	32	21	21	1.98
28408--31048	875	3.0	876	93	3	4462	33	15	17	33	1.91
32797--32824	14	2.0	14	100	0	56	14	14	0	71	1.15
32940--32994	25	2.2	25	93	0	92	32	12	20	34	1.90
33532--33601	31	2.3	31	94	0	122	22	22	11	42	1.85
36665--36738	36	1.9	38	84	13	98	50	5	8	36	1.55
44297--44358	2	31.0	2	100	0	124	50	0	0	50	1.00
50194--50316	31	4.0	31	94	2	203	20	19	22	37	1.94
54641--54763	31	4.0	31	94	2	203	20	19	22	37	1.94
64505--64613	52	2.1	49	80	14	123	49	0	0	48	1.13
64487--64664	29	6.0	29	72	15	98	47	0	1	51	1.12
64553--64664	58	1.9	60	82	14	144	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64611--64663	20	2.7	19	73	18	54	47	0	1	50	1.12
64626--64700	11	6.7	11	71	17	57	49	1	1	48	1.18
64643--64701	23	2.6	22	81	7	64	50	1	1	45	1.21
64741--64810	29	2.3	32	81	13	85	51	4	0	44	1.21
65046--65091	15	3.1	15	78	6	58	30	17	8	43	1.79
72991--73024	17	2.1	16	88	5	50	14	8	0	76	1.01
78045--78082	20	1.9	20	88	0	58	21	26	10	42	1.85
84832--84872	22	1.9	21	85	14	57	26	34	24	14	1.94

Tables:   1

The End!