genome.fa.s4448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004448.1 Hibiscus syriacus cultivar Beakdansim tig00009770_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83621

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6915--6962	21	2.2	23	85	7	64	52	0	14	33	1.42
11561--11602	2	21.5	2	86	13	61	47	0	2	50	1.14
12367--12468	52	2.0	50	84	3	132	16	32	32	18	1.94
12599--12637	20	2.0	19	90	5	60	33	23	0	43	1.54
14739--14787	9	5.4	9	82	0	62	32	20	38	8	1.82
14739--14787	15	3.5	15	75	16	59	32	20	38	8	1.82
14918--14991	25	3.0	24	68	20	62	25	6	4	63	1.37
19608--19706	51	2.0	51	92	6	166	28	20	26	25	1.99
19595--19710	50	2.3	50	86	4	171	26	21	25	25	2.00
19730--19858	52	2.5	50	88	3	186	16	32	34	16	1.91
26067--26228	76	2.1	76	86	3	229	31	14	11	41	1.82
26252--26465	39	5.5	39	86	0	284	28	18	18	35	1.94
26652--26781	21	7.1	20	65	30	76	23	22	14	40	1.91
26734--26795	20	3.2	20	65	17	51	22	16	17	43	1.87
26647--26807	36	4.4	36	88	4	218	24	22	14	38	1.92
27136--28097	132	7.3	131	85	3	1207	29	20	20	29	1.98
27587--28278	44	15.7	44	65	9	250	28	20	21	29	1.98
27136--28056	263	3.5	263	88	2	1296	29	20	20	29	1.98
27955--28145	89	2.1	89	94	0	328	28	20	23	27	1.99
28033--28302	133	2.0	132	92	2	452	28	20	21	29	1.98
27818--28302	221	2.2	219	89	2	729	28	21	21	29	1.98
32648--32685	16	2.4	16	95	0	67	39	7	15	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45564--45604	19	2.0	21	86	13	59	63	2	7	26	1.33
45747--45784	19	2.0	19	100	0	76	15	31	36	15	1.90
45860--45886	13	2.1	13	100	0	54	22	25	14	37	1.93
48515--48674	59	2.7	59	83	2	196	31	25	3	39	1.73
49198--49223	3	8.7	3	100	0	52	65	0	0	34	0.93
63386--63413	12	2.3	12	100	0	56	28	7	35	28	1.84
63527--63643	62	1.9	62	94	3	209	35	11	11	41	1.78
63785--63861	33	2.3	33	88	0	109	38	20	2	37	1.67
64611--64680	31	2.3	31	82	0	77	31	14	24	30	1.94
65166--65355	93	2.1	91	91	2	308	38	10	22	29	1.86
65319--65387	31	2.2	32	84	7	97	33	17	20	28	1.95
65166--65573	214	1.9	215	88	2	615	37	11	22	28	1.88
65353--65569	92	2.4	92	88	0	328	36	11	22	29	1.90
67166--67266	31	3.5	30	70	16	104	57	4	11	25	1.54
68070--68155	40	2.1	41	78	6	95	34	6	12	45	1.69
78359--78394	19	1.9	18	88	5	54	13	22	5	58	1.56

Tables:   1

The End!