genome.fa.s4449.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004449.1 Hibiscus syriacus cultivar Beakdansim tig00009771_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87568

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581--7622	6	7.5	6	97	2	63	28	54	16	0	1.42
8211--8301	21	4.4	21	72	8	69	24	20	20	34	1.97
8226--8367	41	3.4	41	87	5	180	25	22	21	30	1.98
8247--8319	20	3.6	20	77	17	87	24	21	17	35	1.95
8266--8381	21	5.6	21	84	9	130	22	21	24	31	1.98
8247--8381	41	3.3	41	86	5	148	23	21	22	32	1.98
9378--9422	12	3.6	12	82	8	54	46	44	0	8	1.34
15862--15985	45	2.7	45	89	1	176	29	12	20	38	1.88
25354--25546	30	6.4	30	96	0	350	31	23	20	24	1.98
25357--25573	30	7.2	30	93	0	245	32	23	19	23	1.98
25354--25573	90	2.4	90	91	0	341	32	24	19	23	1.97
25529--25624	31	3.1	30	74	12	88	32	20	19	27	1.97
25798--25826	4	7.2	4	100	0	58	48	24	0	27	1.51
28398--28583	9	21.4	8	65	19	54	73	1	17	8	1.14
28401--28456	21	2.6	22	78	13	64	76	0	10	12	1.01
28400--28432	17	1.9	17	88	11	50	78	0	12	9	0.95
28401--28462	30	2.0	31	82	14	76	77	0	11	11	1.00
28441--28577	19	7.8	16	73	20	71	72	1	20	5	1.14
28441--28489	17	2.9	16	90	6	71	69	0	22	8	1.14
28453--28570	46	2.5	46	75	15	118	72	1	19	5	1.13
28467--28568	12	8.3	13	70	16	58	72	1	19	5	1.15
28496--28583	14	6.0	14	75	16	56	73	1	19	5	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28484--28583	27	3.7	27	67	15	64	74	2	19	5	1.11
29944--30587	55	11.7	55	82	7	598	28	17	23	30	1.97
30327--30477	51	2.9	51	86	4	185	31	16	23	27	1.96
33297--33418	58	2.1	58	79	4	127	35	15	12	36	1.85
39380--39608	116	2.0	115	97	0	431	27	20	9	42	1.83
40568--40613	18	2.5	19	72	10	51	43	2	2	52	1.25
54369--54738	20	18.5	20	87	3	370	33	26	20	20	1.96
54407--54757	20	17.6	19	87	3	405	33	25	19	21	1.97
55430--55475	24	2.0	23	87	12	67	26	15	21	36	1.93
55650--55674	12	2.1	12	100	0	50	72	0	28	0	0.86
57977--58283	19	17.4	19	78	17	351	47	17	20	14	1.83
58005--58283	52	5.2	52	89	8	347	47	16	20	15	1.83
58044--58283	71	3.4	71	82	13	348	47	17	20	15	1.82
57977--58315	142	2.4	137	90	6	506	46	17	20	15	1.83
58312--58413	19	5.6	19	85	12	151	14	23	17	44	1.86
58525--58560	13	2.6	14	86	4	56	47	22	0	30	1.52
58555--58627	12	6.0	12	67	20	53	57	16	1	24	1.47
60463--60555	33	2.8	33	91	0	159	48	21	19	10	1.79
60482--60538	14	3.7	14	72	20	51	47	22	19	10	1.80
60426--60560	19	7.6	19	75	16	119	46	23	18	11	1.81
60566--60646	33	2.5	33	91	4	137	9	20	23	45	1.81
60585--60683	19	5.4	19	76	12	100	11	18	25	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60727--61196	93	5.1	93	98	1	912	46	19	12	21	1.82
62904--62993	14	5.7	14	74	23	81	42	23	25	8	1.83
62896--63010	33	3.5	33	95	0	212	45	20	24	9	1.81
62903--63015	19	6.8	18	72	23	88	43	22	24	9	1.83
63027--63083	14	3.7	14	72	20	51	10	24	22	42	1.85
63022--63102	33	2.5	33	91	4	128	9	24	23	41	1.84
63022--63109	19	5.2	18	70	23	66	10	23	21	44	1.83
63201--63271	33	2.2	33	92	0	115	47	18	22	11	1.80
63453--63507	22	2.5	22	81	0	74	20	16	40	23	1.91
63653--63846	20	9.6	20	82	5	221	19	19	25	35	1.95
63653--63846	60	3.2	60	83	0	253	19	19	25	35	1.95
63839--63915	21	3.7	20	70	13	57	27	16	23	32	1.96
63901--63952	20	2.6	20	96	0	95	21	13	26	38	1.90
75266--75377	59	1.9	59	83	7	147	40	7	23	29	1.81
79519--79565	19	2.5	19	83	10	60	65	4	0	29	1.11
80137--80229	21	4.5	21	69	8	55	39	16	13	30	1.87
80661--80697	19	1.9	19	94	0	65	29	29	2	37	1.71
80661--80709	19	2.3	20	86	13	64	28	28	4	38	1.75
80731--80787	20	2.8	20	94	0	96	29	24	15	29	1.96
81235--81409	60	2.9	60	77	8	160	32	21	4	41	1.73
81557--81708	60	2.5	60	80	8	166	44	3	19	32	1.69

Tables:   1

The End!