Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000445.1 Hibiscus syriacus cultivar Beakdansim tig00000814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65290

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12039--12068
7
4.3
7
100
0
60
60
0
0
40
0.97
14040--14089
20
2.8
18
80
17
59
48
4
2
46
1.32
14048--14125
22
3.7
21
78
13
88
43
2
1
52
1.23
14177--14221
23
2.0
23
82
8
56
48
8
2
40
1.47
15184--16166
508
2.0
497
91
3
1601
33
18
14
33
1.91
20848--20892
22
2.0
22
91
0
72
40
15
20
24
1.91
23798--23867
30
2.3
31
92
5
124
27
2
11
58
1.47
25580--25743
59
2.7
57
79
10
168
33
21
4
39
1.75
28184--28232
25
2.0
23
84
7
62
53
6
10
30
1.59
28304--28346
18
2.4
17
81
11
50
32
2
2
62
1.20
31590--31644
12
4.7
12
93
2
94
32
0
40
27
1.57
39705--39729
2
12.5
2
100
0
50
48
0
0
52
1.00
39875--39940
2
33.5
2
73
14
57
51
1
3
43
1.26
45324--45385
22
2.8
22
87
0
88
22
25
24
27
2.00
46698--46729
10
3.2
10
100
0
64
50
0
50
0
1.00
46696--46735
13
3.1
13
85
0
53
50
0
50
0
1.00
47388--47434
19
2.5
19
89
3
69
21
21
6
51
1.70
54605--54655
17
3.0
17
83
16
70
76
0
15
7
1.00
54601--54653
12
4.6
11
75
9
52
79
0
15
5
0.91
54651--54735
45
1.9
44
80
2
98
35
15
28
21
1.93
55410--55463
27
2.0
27
92
0
90
44
25
18
11
1.83
55921--56426
130
3.8
134
78
9
511
34
18
16
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55916--56444
262
2.0
265
84
4
683
34
18
17
29
1.94
55922--56435
132
3.9
132
76
9
485
34
18
16
30
1.93
56811--56860
2
25.0
2
87
0
73
52
0
2
46
1.12
57922--58059
59
2.6
52
79
14
163
20
15
26
37
1.92
57953--58072
59
2.0
59
95
0
213
23
15
25
35
1.94
60108--60149
21
2.0
21
86
9
59
23
30
11
33
1.91
62099--62219
50
2.4
50
95
0
215
35
0
12
51
1.46
62488--62601
59
1.9
59
94
0
201
23
17
22
35
1.95

Tables:   1

The End!