genome.fa.s4450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004450.1 Hibiscus syriacus cultivar Beakdansim tig00009785_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113089

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61--114	3	19.0	3	82	17	71	68	1	0	29	1.00
61--124	17	3.8	17	84	13	80	71	1	0	26	0.94
61--104	20	2.3	19	96	4	79	68	0	0	31	0.90
73--124	25	2.1	26	82	7	56	73	1	0	25	0.94
62--127	28	2.4	28	84	5	89	74	1	0	24	0.91
106--148	11	3.9	11	84	9	52	86	0	4	9	0.71
489--1057	123	4.7	123	88	6	855	24	20	15	39	1.92
489--1057	245	2.4	239	89	6	859	24	20	15	39	1.92
1076--1293	74	3.0	73	86	5	300	39	11	17	30	1.86
1128--1250	37	3.3	36	68	4	102	39	11	19	30	1.87
2017--2067	20	2.4	22	87	12	88	37	13	13	35	1.85
3583--3649	35	1.9	35	82	11	84	31	23	11	32	1.91
7978--8061	43	1.9	44	82	2	107	32	22	11	33	1.91
10467--10531	23	2.9	24	80	17	61	60	4	4	30	1.37
11879--11977	3	33.0	3	76	13	89	68	1	1	29	1.03
11883--11970	25	3.4	25	80	11	97	68	1	1	29	1.04
11880--11971	28	3.4	26	83	11	107	68	1	1	29	1.03
11879--11977	31	3.3	30	78	13	89	68	1	1	29	1.03
11898--11999	6	16.3	6	76	16	57	74	1	1	21	1.02
13986--14025	20	2.1	19	86	13	55	17	2	7	72	1.19
14579--15186	253	2.4	249	86	6	859	26	12	20	40	1.88
15505--15551	18	2.7	17	83	3	58	27	29	6	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23049--23087	15	2.5	16	83	8	53	17	25	25	30	1.97
23135--23191	15	3.7	15	68	9	51	17	26	31	24	1.97
24796--24851	21	2.7	21	91	5	87	51	14	16	17	1.76
27561--27594	16	2.1	17	88	5	52	32	2	0	64	1.08
32998--33079	42	1.9	43	87	2	121	35	13	17	34	1.88
32807--33035	121	1.9	123	83	3	284	32	18	16	32	1.93
41177--41269	44	2.1	44	84	2	125	36	15	18	30	1.91
41188--41297	44	2.5	44	82	5	125	41	16	14	27	1.87
44971--45030	22	2.5	25	84	10	81	50	0	1	48	1.11
46288--46585	87	3.4	88	92	1	490	32	18	19	29	1.95
46949--47010	31	2.1	31	84	6	83	33	4	11	50	1.60
48385--48445	14	4.6	14	70	12	56	63	19	6	9	1.46
50257--50342	31	2.8	31	87	7	129	32	13	8	45	1.74
50332--50398	32	2.1	31	83	8	82	31	13	17	37	1.89
57493--57532	21	1.9	21	85	10	55	25	37	25	12	1.91
62898--63004	39	2.8	38	82	5	126	42	12	6	38	1.68
62977--63116	58	2.4	58	80	4	149	46	8	5	40	1.56
63034--63222	101	1.9	101	84	2	254	43	11	5	40	1.63
63137--63582	115	3.8	115	81	4	484	42	13	6	37	1.71
63134--63578	58	7.7	58	82	4	468	42	13	6	37	1.72
63137--63582	117	3.8	116	79	5	463	42	13	6	37	1.71
63751--63858	45	2.4	45	82	0	144	41	19	9	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64054--64092	12	3.1	12	88	7	51	51	7	7	33	1.59
65493--65523	2	15.5	2	100	0	62	48	0	0	51	1.00
72877--72951	38	2.0	38	94	0	132	20	12	13	54	1.70
79652--79816	84	2.0	84	96	0	303	41	9	16	33	1.80
82709--82809	53	1.9	52	89	2	157	17	11	16	53	1.72
85746--85957	74	2.9	74	87	2	284	31	9	17	40	1.83
85952--86079	41	3.1	41	72	14	127	25	20	22	31	1.98
86158--86244	44	2.0	44	88	4	131	34	22	16	26	1.95
91018--91108	42	2.2	42	82	4	103	19	19	21	38	1.94
91077--91130	21	2.6	21	88	5	74	24	12	22	40	1.89
93337--93433	29	3.3	29	97	0	176	34	15	20	29	1.94
94933--94980	23	2.0	24	84	11	64	2	27	2	68	1.11
96428--96484	21	2.8	20	78	5	69	24	19	26	29	1.98
97677--97759	2	41.5	2	100	0	166	49	0	0	50	1.00
98742--98779	18	2.1	19	85	5	51	55	0	7	36	1.29
99233--99272	21	1.9	21	85	10	55	20	7	2	70	1.24
99331--99384	17	3.1	16	77	15	54	40	0	0	59	0.98
110391--110442	20	2.6	20	87	6	79	44	25	13	17	1.85
110351--110442	40	2.3	40	83	10	109	39	27	13	20	1.89
110414--110502	40	2.2	40	84	7	110	34	22	17	24	1.96
110428--110522	40	2.3	40	85	3	129	34	23	17	24	1.96

Tables:   1

The End!