genome.fa.s4451.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004451.1 Hibiscus syriacus cultivar Beakdansim tig00009786_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92019

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4456--4480	13	1.9	13	100	0	50	8	16	16	60	1.58
5204--5246	20	2.2	20	86	0	59	32	11	18	37	1.87
8492--8568	31	2.5	31	93	0	118	38	20	18	22	1.93
11705--11755	19	2.7	19	91	8	79	27	15	33	23	1.95
11599--11806	65	3.2	64	80	13	230	27	17	25	29	1.97
11974--12013	20	2.0	21	85	14	57	45	7	5	42	1.54
12804--12847	21	2.1	21	91	0	70	40	15	36	6	1.74
13646--13705	21	2.9	21	77	5	68	31	6	38	23	1.81
20243--20403	65	2.5	65	84	3	218	27	16	27	29	1.97
20353--20404	19	2.8	19	85	8	72	25	17	34	23	1.96
20622--20661	20	2.0	21	85	14	57	45	7	5	42	1.54
22439--22512	23	3.2	23	92	3	123	17	28	25	28	1.98
25905--26018	61	1.9	60	83	1	147	42	13	8	35	1.75
31287--31323	19	1.9	19	88	0	56	24	37	2	35	1.70
32178--32218	15	2.9	15	85	7	59	60	0	0	39	0.96
41809--41857	19	2.6	19	96	0	89	36	12	26	24	1.91
48382--48435	26	2.1	26	96	0	99	31	35	9	24	1.87
49369--49431	23	2.7	23	92	0	99	38	20	4	36	1.74
49576--49642	30	2.2	29	82	10	73	43	0	4	52	1.21
49744--49782	20	2.0	20	89	0	60	48	10	15	25	1.76
49795--49857	23	2.7	23	92	0	99	38	20	4	36	1.74
50268--50333	34	1.9	34	96	0	123	16	16	18	48	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50606--50642	18	2.1	18	89	0	56	51	10	5	32	1.60
51058--51109	21	2.5	20	84	9	68	42	21	1	34	1.64
51063--51133	23	3.2	22	84	11	83	40	22	4	32	1.73
54013--54502	183	2.7	182	95	0	863	33	17	15	34	1.91
54699--55807	198	5.6	198	97	1	2064	31	15	16	36	1.90
55926--55974	19	2.6	19	93	0	80	57	10	2	30	1.43
57768--57833	33	2.0	33	90	0	105	22	48	0	28	1.51
60154--60196	20	2.3	18	85	14	61	20	16	11	51	1.75
60159--60205	20	2.4	19	82	10	67	19	17	10	53	1.72
60340--60386	20	2.3	20	89	10	78	17	17	10	55	1.69
60126--60598	181	2.6	182	89	1	698	26	16	14	42	1.86
60665--61378	228	3.1	229	96	0	1308	39	7	7	44	1.61
66040--66087	24	2.0	24	100	0	96	41	20	4	33	1.72
70262--70327	29	2.2	31	92	7	111	46	0	9	43	1.35
71405--71437	16	2.0	17	88	5	50	66	0	0	33	0.92
71423--71447	9	2.8	9	100	0	50	60	0	0	40	0.97
73036--73176	64	2.2	63	80	7	151	30	17	25	26	1.97
73164--73241	20	3.7	20	93	6	120	30	20	23	25	1.98
74770--74845	31	2.4	31	82	2	89	28	30	25	15	1.96
74722--74845	63	2.0	63	81	9	146	28	28	25	17	1.98
74787--74845	31	1.9	31	89	0	91	27	30	27	15	1.96
75756--75847	29	3.1	29	93	1	157	44	20	3	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78101--78141	18	2.3	18	95	0	73	36	21	2	39	1.67
88628--88672	19	2.4	19	96	3	83	37	20	4	37	1.73
90384--90416	15	2.1	16	88	5	50	39	0	3	57	1.14

Tables:   1

The End!