genome.fa.s4452.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004452.1 Hibiscus syriacus cultivar Beakdansim tig00009788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125500

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2208--2250	23	1.9	22	85	4	59	23	27	6	41	1.80
9064--9965	446	2.0	449	91	1	1461	26	18	15	39	1.90
16509--17329	53	15.5	52	88	4	999	23	25	19	31	1.98
17339--17422	37	2.3	37	83	4	107	21	25	15	38	1.92
18710--18826	18	7.1	17	70	22	63	5	15	0	78	0.93
18710--18826	8	13.3	9	73	16	54	5	15	0	78	0.93
18714--18829	23	5.0	23	74	18	82	6	16	0	76	0.99
18712--18819	31	3.4	31	83	13	125	6	15	0	77	0.96
18745--18801	7	7.7	7	79	14	53	10	12	0	77	1.00
18711--18819	16	6.9	16	74	17	86	6	15	0	77	0.95
20876--20914	18	2.2	18	95	0	69	30	30	17	20	1.96
29246--29278	14	2.4	14	94	0	57	48	24	18	9	1.76
29569--29595	2	13.5	2	100	0	54	51	0	0	48	1.00
36280--36335	15	3.6	15	79	9	67	42	12	12	32	1.80
36283--36333	17	3.1	17	77	11	61	43	11	9	35	1.75
36502--36558	21	2.7	21	97	0	105	24	26	28	21	1.99
36755--36809	13	4.2	13	75	13	58	49	12	3	34	1.59
36795--36893	33	3.0	33	94	1	164	45	15	7	32	1.73
36888--36927	21	1.9	21	94	0	71	47	7	15	30	1.72
39233--39272	12	3.1	12	80	19	53	20	17	15	47	1.83
39232--39271	15	2.9	14	85	14	57	20	17	15	47	1.83
43508--43560	25	2.1	25	100	0	106	32	11	20	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45142--45184	17	2.5	17	84	3	59	51	0	0	48	1.00
48151--48219	10	7.1	10	73	12	63	18	23	31	26	1.97
48169--48221	19	2.8	19	97	0	97	16	26	33	22	1.96
48217--48244	14	2.0	14	100	0	56	21	50	21	7	1.72
48215--48291	17	4.4	17	82	6	100	16	44	24	14	1.85
49174--49297	63	2.0	63	82	9	155	16	27	29	26	1.97
49174--49297	31	4.0	32	72	12	80	16	27	29	26	1.97
54677--54713	17	2.2	17	95	0	65	43	5	5	45	1.49
54789--54815	13	2.1	13	100	0	54	29	7	7	55	1.55
55790--55831	23	1.9	23	90	9	70	21	14	0	64	1.29
65140--65187	18	2.7	17	87	6	60	33	25	2	39	1.67
65998--66057	25	2.4	25	100	0	120	31	21	3	43	1.69
66115--66145	2	15.5	2	100	0	62	48	0	0	51	1.00
80568--80631	30	2.1	30	82	5	76	31	15	7	45	1.75
82197--82310	61	1.9	61	87	1	167	27	15	21	35	1.94
82198--82323	61	2.1	60	82	4	146	27	16	19	36	1.93
82511--82631	60	2.0	60	82	6	147	38	13	16	32	1.87
88809--88851	10	4.0	10	77	16	50	58	20	11	9	1.61
88770--88869	24	4.2	24	78	5	105	57	18	13	12	1.66
89033--89110	24	3.2	24	83	0	84	53	16	14	15	1.73
90278--90387	29	3.8	29	86	1	139	28	8	21	41	1.82
93018--93126	24	4.5	24	72	0	101	21	15	15	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101976--102050	35	2.1	35	85	0	96	34	26	26	12	1.91
102128--102218	24	3.8	24	85	2	121	37	19	17	25	1.94
102128--102218	47	1.9	48	88	2	139	37	19	17	25	1.94
103358--103395	18	2.1	18	90	0	58	31	18	0	50	1.47
105542--105598	2	28.5	2	96	0	105	0	50	0	49	1.00
115750--116571	53	15.5	52	88	4	1012	23	25	18	31	1.98
115750--116571	160	5.2	161	87	5	1093	23	25	18	31	1.98
115732--116571	213	4.0	213	88	3	1126	23	25	19	31	1.98
116581--116664	37	2.3	37	83	4	107	21	25	15	38	1.92
117948--118003	16	3.4	16	90	2	85	0	19	0	80	0.71
117946--118072	9	14.3	9	75	20	58	5	14	0	79	0.90
117935--118083	10	15.0	9	73	20	95	4	14	1	79	0.95
120122--120160	18	2.2	18	95	0	69	30	30	17	20	1.96

Tables:   1

The End!