genome.fa.s4453.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004453.1 Hibiscus syriacus cultivar Beakdansim tig00009794_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92960

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1516--1587	30	2.4	30	92	0	117	23	41	19	15	1.89
1947--2002	27	2.1	27	83	6	69	46	5	1	46	1.36
2279--2333	24	2.4	22	80	14	65	20	23	7	49	1.74
2295--2347	24	2.2	24	93	6	90	18	24	5	50	1.68
2863--2910	23	2.1	22	81	11	53	54	0	4	41	1.20
4535--4613	40	2.0	39	85	7	106	18	12	11	56	1.65
5149--5241	41	2.3	41	79	7	100	24	22	18	34	1.96
5066--5241	21	8.5	21	69	9	76	27	21	18	32	1.96
5872--5960	14	5.6	14	71	23	70	10	24	23	41	1.85
5855--5984	33	3.9	33	96	1	215	10	24	22	42	1.85
8137--8203	21	3.2	21	66	6	55	23	35	20	19	1.95
8110--8203	42	2.2	42	81	7	102	22	35	21	21	1.96
9557--9591	14	2.6	14	90	4	54	28	0	25	45	1.54
9697--9749	19	2.8	19	97	0	97	45	20	20	13	1.84
9758--9883	33	3.9	32	88	9	193	14	23	19	42	1.88
9754--9902	19	8.7	19	69	20	96	14	22	20	41	1.89
9751--9882	66	2.0	65	97	1	246	15	23	19	40	1.90
12225--12278	24	2.2	24	90	0	81	40	20	16	22	1.91
13065--13114	21	2.4	21	86	3	66	40	16	24	20	1.91
13099--13190	20	4.6	20	73	2	76	39	21	18	20	1.93
13388--13437	20	2.5	20	100	0	100	34	28	22	16	1.95
13464--13531	19	3.8	19	83	12	92	14	22	16	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15569--15622	20	2.7	20	80	11	74	38	22	22	16	1.93
15724--15764	20	2.0	20	85	0	55	17	21	24	36	1.94
16246--16285	18	2.2	18	90	0	62	15	12	45	27	1.82
17609--17646	20	1.9	20	88	0	58	50	21	15	13	1.78
17896--17939	22	2.0	22	95	0	79	18	15	45	20	1.85
18128--18179	20	2.6	20	87	0	68	26	19	26	26	1.99
18188--18241	20	2.7	20	97	0	99	25	18	24	31	1.97
18107--18244	61	2.3	61	83	0	177	24	16	23	35	1.95
18148--18262	61	1.9	61	81	3	142	21	20	23	34	1.96
18312--18352	21	2.0	21	85	0	55	34	24	17	24	1.96
18641--18681	2	20.5	2	100	0	82	48	0	0	51	1.00
18706--18750	12	3.6	12	77	11	54	51	0	6	42	1.28
18702--18756	26	2.1	26	100	0	110	50	0	7	41	1.30
18888--18915	13	2.2	13	100	0	56	53	0	0	46	1.00
24068--24097	14	2.1	14	100	0	60	23	20	23	33	1.97
28222--28268	3	16.0	3	82	4	51	2	23	4	70	1.16
29821--29885	20	3.2	20	63	16	53	29	15	20	35	1.93
29815--29904	40	2.3	39	98	0	135	35	15	17	31	1.92
29841--29910	20	3.5	20	66	21	56	35	15	17	31	1.91
32306--32350	24	1.9	24	86	4	65	28	17	26	26	1.98
32901--32935	18	1.9	18	94	0	61	20	20	34	25	1.96
36995--37154	65	2.5	63	84	10	191	32	21	17	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39079--39117	21	1.9	21	94	5	71	58	0	5	35	1.20
40929--40953	12	2.1	12	100	0	50	64	12	16	8	1.49
42927--43001	21	3.3	23	75	17	59	25	25	21	28	1.99
45746--45888	65	2.2	64	81	8	166	31	23	17	27	1.97
57256--57324	7	9.7	7	98	1	129	0	56	0	43	0.99
61852--62077	57	4.0	57	87	2	319	24	27	20	26	1.99
61852--62077	114	2.0	114	91	0	362	24	27	20	26	1.99
67637--67670	14	2.4	14	90	0	50	38	5	8	47	1.59
72611--72665	21	2.6	22	83	11	62	32	3	5	58	1.38
81972--82051	19	4.1	19	85	9	92	75	7	2	15	1.14
81963--82027	29	2.1	29	83	8	76	76	4	3	15	1.07
82088--82135	19	2.5	20	80	13	55	66	4	4	25	1.27
82346--82375	2	15.0	2	92	0	51	46	0	3	50	1.18
82469--82505	15	2.4	16	82	13	51	78	0	13	8	0.96
82488--82515	10	2.8	10	100	0	56	75	0	10	14	1.06
82474--82519	24	1.9	24	86	8	67	76	0	13	10	1.03
82473--82528	25	2.2	27	78	18	66	76	0	10	12	1.01
82561--82627	18	3.7	18	71	11	57	70	0	7	22	1.12
82563--82712	14	11.4	12	68	22	63	66	1	6	26	1.23
82656--82708	23	2.3	23	84	9	72	60	3	0	35	1.15
82664--82709	21	2.3	19	85	10	65	63	2	0	34	1.07
84671--84867	106	1.9	106	88	4	299	20	19	24	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84523--84890	190	1.9	191	82	4	456	22	19	24	33	1.97
85928--85983	12	4.4	12	88	6	76	0	16	1	82	0.76
85928--85985	13	4.5	13	83	12	75	0	17	1	81	0.78
85928--85984	14	4.3	14	78	10	66	0	15	1	82	0.75
86022--86060	16	2.5	15	84	8	51	0	20	0	79	0.73

Tables:   1

The End!