Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004454.1 Hibiscus syriacus cultivar Beakdansim tig00009796_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 368644
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 2 of 2
Found at i:217188 original size:20 final size:20
Alignment explanation
Indices: 217145--217188 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
217135 CGATAGTCAT
* *
217145 TTTCGTGTTGCGATTTTCAT
1 TTTCGTGTTGCGATTTTAAG
217165 TTTCGTGTTGCGATTTTAAG
1 TTTCGTGTTGCGATTTTAAG
217185 TTTC
1 TTTC
217189 AGAAACTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.14, G:0.20, T:0.55
Consensus pattern (20 bp):
TTTCGTGTTGCGATTTTAAG
Found at i:218510 original size:18 final size:18
Alignment explanation
Indices: 218489--218534 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
218479 TCCACTTCGG
218489 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
218507 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
218525 GAGCCATCAC
1 GAGCCATCAC
218535 TTGATCGACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.28, C:0.46, G:0.13, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:219112 original size:20 final size:20
Alignment explanation
Indices: 219089--219142 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
219079 GAAACTTAAA
219089 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* *
219109 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGCGAAAATGACT
*
219129 ATCGCAATGCGAAA
1 ATCGCAACGCGAAA
219143 TGAAAATCGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:219151 original size:19 final size:19
Alignment explanation
Indices: 219086--219187 Score: 79
Period size: 20 Copynumber: 5.5 Consensus size: 19
219076 CACGAAACTT
*
219086 AAAATCGCAACGCGAAAATG
1 AAAATCGCAATGCG-AAATG
** *
219106 ACTATCGCAACGCGGAAATG
1 AAAATCGCAATGC-GAAATG
***
219126 GCTATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
*
219145 AAAATCGCAAT--G--A-C
1 AAAATCGCAATGCGAAATG
219159 AAAATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
219178 AAAATCGCAA
1 AAAATCGCAA
219188 CGACAAAATC
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
14 11 0.16
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 24 0.36
20 27 0.40
21 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.21, T:0.15
Consensus pattern (19 bp):
AAAATCGCAATGCGAAATG
Found at i:219171 original size:33 final size:33
Alignment explanation
Indices: 219129--219208 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
219119 GGAAATGGCT
*
219129 ATCGCAATGCGAAATGAAAATCGCAATGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
219162 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
219195 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
219209 ATCTGCGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:219209 original size:14 final size:15
Alignment explanation
Indices: 219144--219211 Score: 61
Period size: 14 Copynumber: 4.5 Consensus size: 15
219134 AATGCGAAAT
*
219144 GAAAATCGCAATGAC
1 GAAAATCGCAACGAC
*
219159 -AAAATCGCAATGCGAAAT
1 GAAAATCGCAA--CG--AC
219177 GAAAATCGCAACGAC
1 GAAAATCGCAACGAC
219192 -AAAATCGCAACG-C
1 GAAAATCGCAACGAC
219205 GAAAATC
1 GAAAATC
219212 TGCGATTTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
13 1 0.02
14 28 0.64
15 1 0.02
16 1 0.02
17 2 0.05
18 1 0.02
19 10 0.23
ACGTcount: A:0.49, C:0.22, G:0.18, T:0.12
Consensus pattern (15 bp):
GAAAATCGCAACGAC
Found at i:219237 original size:20 final size:20
Alignment explanation
Indices: 219212--219361 Score: 60
Period size: 20 Copynumber: 8.2 Consensus size: 20
219202 CGCGAAAATC
219212 TGCGATTTTCATTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
*
219232 TGCGA--TT--TTGT--CGT
1 TGCGATTTTCATTTTCGCGT
*
219246 TGCGATTTTCA-TTTCGCAT
1 TGCGATTTTCATTTTCGCGT
*
219265 TGCGA--TT--TTGT--CGT
1 TGCGATTTTCATTTTCGCGT
* * *
219279 TGCGATTTT--GTTTCACAT
1 TGCGATTTTCATTTTCGCGT
*** *
219297 TGCGATAGCCATTTCCGCGT
1 TGCGATTTTCATTTTCGCGT
**
219317 TGCGATAGTCATTTTCGCGT
1 TGCGATTTTCATTTTCGCGT
* * *
219337 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTTCATTTTCGCGT
219357 TGCGA
1 TGCGA
219362 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 22, Indels: 26
0.66 0.15 0.18
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 4 0.04
18 10 0.11
19 7 0.07
20 48 0.51
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (20 bp):
TGCGATTTTCATTTTCGCGT
Found at i:219246 original size:14 final size:14
Alignment explanation
Indices: 219229--219289 Score: 68
Period size: 14 Copynumber: 4.0 Consensus size: 14
219219 TTCATTTTCG
219229 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
219243 CGTTGCGATTTTCATTT
1 CGTTGCGA-TTT--TGT
219260 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
219276 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
219290 TTCACATTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 20 0.50
15 3 0.08
16 4 0.10
17 4 0.10
18 3 0.08
19 6 0.15
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.49
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:219268 original size:33 final size:33
Alignment explanation
Indices: 219212--219302 Score: 139
Period size: 33 Copynumber: 2.8 Consensus size: 33
219202 CGCGAAAATC
*
219212 TGCGATTTTCATTTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTCA-TTTCGCATTGCGATTTTGTCGT
219246 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
* *
219279 TGCGATTTT-GTTTCACATTGCGAT
1 TGCGATTTTCATTTCGCATTGCGAT
219303 AGCCATTTCC
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 13 0.24
33 30 0.56
34 11 0.20
ACGTcount: A:0.12, C:0.18, G:0.22, T:0.48
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
Found at i:219741 original size:21 final size:20
Alignment explanation
Indices: 219715--219783 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
219705 CTGTCATCCC
219715 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
219736 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
* *
219757 TCAAGAGTCCCCCCCACCGT
1 TCAAGAGTCCCCTCCATCGT
219777 TCAAGAG
1 TCAAGAG
219784 GTCACTGTCA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
20 10 0.27
21 26 0.70
22 1 0.03
ACGTcount: A:0.25, C:0.41, G:0.16, T:0.19
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:219795 original size:41 final size:42
Alignment explanation
Indices: 219705--219795 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 42
219695 CCCGACTCAC
* *
219705 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
* * *
219747 CTATCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGTCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
219788 CTGTCATC
1 CTGTCATC
219796 ATTGAAGAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 22 0.51
42 21 0.49
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:219804 original size:41 final size:41
Alignment explanation
Indices: 219708--219825 Score: 110
Period size: 42 Copynumber: 2.8 Consensus size: 41
219698 GACTCACCTG
* * * *
219708 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCACTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCACTA
* * *
219750 TCATCCCTCAAGAGTCCCCCCCACCGTTCAAGAGGTCACTG
1 TCATCACTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
* * * * *
219791 TCATCATTGAAGAGGTCCCTCCCACCATTCTAGAG
1 TCATCACTCAAGA-GTCCCCCCCACCGTTCAAGAG
219826 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 27 0.42
42 37 0.58
ACGTcount: A:0.24, C:0.38, G:0.16, T:0.22
Consensus pattern (41 bp):
TCATCACTCAAGAGTCCCCCCCACCGTTCAAGAGGCCACTA
Found at i:219819 original size:21 final size:21
Alignment explanation
Indices: 219757--219825 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
219747 CTATCATCCC
* *
219757 TCAAGA-GTCCCCCCCACCGT
1 TCAAGAGGTCCCTCCCACCAT
* ** *
219777 TCAAGAGGTCACTGTCATCAT
1 TCAAGAGGTCCCTCCCACCAT
*
219798 TGAAGAGGTCCCTCCCACCAT
1 TCAAGAGGTCCCTCCCACCAT
*
219819 TCTAGAG
1 TCAAGAG
219826 CCCGATTCAC
Statistics
Matches: 35, Mismatches: 13, Indels: 1
0.71 0.27 0.02
Matches are distributed among these distances:
20 6 0.17
21 29 0.83
ACGTcount: A:0.25, C:0.35, G:0.19, T:0.22
Consensus pattern (21 bp):
TCAAGAGGTCCCTCCCACCAT
Found at i:221391 original size:19 final size:19
Alignment explanation
Indices: 221367--221433 Score: 99
Period size: 19 Copynumber: 3.8 Consensus size: 19
221357 GCAACGAGAG
221367 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
221386 AATCGCAA--CG-AA--AA
1 AATCGCAATGCGAAATGAA
221400 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
221419 AATCGCAATGCGAAA
1 AATCGCAATGCGAAA
221434 ACTAAATTCG
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
14 10 0.23
16 4 0.09
17 4 0.09
19 25 0.58
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.13
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:221396 original size:33 final size:33
Alignment explanation
Indices: 221354--221426 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
221344 GAAACTGACT
* *
221354 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAAAAAATCGCAATGCGAAATGAAA
221387 ATCGCAACGAAAAAATCGCAATGCGAAATGAAA
1 ATCGCAACGAAAAAATCGCAATGCGAAATGAAA
221420 ATCGCAA
1 ATCGCAA
221427 TGCGAAAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.12
Consensus pattern (33 bp):
ATCGCAACGAAAAAATCGCAATGCGAAATGAAA
Found at i:221483 original size:19 final size:20
Alignment explanation
Indices: 221440--221492 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
221430 GAAAACTAAA
221440 TTCGCATTGCGATTTTCATT
1 TTCGCATTGCGATTTTCATT
221460 TTCGCATTGCGATTTTCA-T
1 TTCGCATTGCGATTTTCATT
221479 TTCGCATTGCGATT
1 TTCGCATTGCGATT
221493 CTCTCGTTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (20 bp):
TTCGCATTGCGATTTTCATT
Found at i:221522 original size:20 final size:20
Alignment explanation
Indices: 221497--221545 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
221487 GCGATTCTCT
221497 CGTTGCGATAGCCATTTCCG
1 CGTTGCGATAGCCATTTCCG
*
221517 CGTTGCGATAGCCATTTTCG
1 CGTTGCGATAGCCATTTCCG
*
221537 TGTTGCGAT
1 CGTTGCGAT
221546 TTCCCCGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.14, C:0.24, G:0.27, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGCCATTTCCG
Found at i:224010 original size:24 final size:24
Alignment explanation
Indices: 223976--224029 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
223966 CTGAAACATC
*
223976 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
224000 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
224024 ATCAAA
1 ATCAAA
224030 TTTCGAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:224769 original size:21 final size:21
Alignment explanation
Indices: 224739--224834 Score: 74
Period size: 20 Copynumber: 4.7 Consensus size: 21
224729 AACTTTGAAA
* *
224739 ATCGCATTGCGATTCTGTATT
1 ATCGCGTTGCGATTATGTATT
* * *
224760 ATCTCGTTGCGA--AAGTCAGT
1 ATCGCGTTGCGATTATGT-ATT
*
224780 ATCGCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATTATGTATT
*
224801 ATCGCGTTGCGA-TA-GTCAGT
1 ATCGCGTTGCGATTATGT-ATT
*
224821 ATCGCATTGCGATT
1 ATCGCGTTGCGATT
224835 TTCCAAATTC
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
19 4 0.07
20 27 0.47
21 25 0.43
22 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (21 bp):
ATCGCGTTGCGATTATGTATT
Found at i:224787 original size:20 final size:20
Alignment explanation
Indices: 224759--224833 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
224749 GATTCTGTAT
* *
224759 TATCTCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
224779 TATCGCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
224800 TATCGCGTTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
224820 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
224834 TTTCCAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 3 0.07
20 26 0.58
21 14 0.31
22 2 0.04
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:224835 original size:41 final size:41
Alignment explanation
Indices: 224739--224836 Score: 160
Period size: 41 Copynumber: 2.4 Consensus size: 41
224729 AACTTTGAAA
* *
224739 ATCGCATTGCGATTCTGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
* *
224780 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
224821 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
224837 CCAAATTCGC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.39
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCGTTGCGAAAGTCAGT
Found at i:224852 original size:41 final size:41
Alignment explanation
Indices: 224739--224854 Score: 108
Period size: 41 Copynumber: 2.8 Consensus size: 41
224729 AACTTTGAAA
* ** * * * *
224739 ATCGCATTGCGATTCTGTATTATCTCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCAAATATCGCATTGCGATAGTCAGT
* ** * *
224780 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGT
1 ATCGCATTGCGATTTTCAAATATCGCATTGCGATAGTCAGT
224821 ATCGCATTGCGATTTTCCAAAT-TCGCATTGCGAT
1 ATCGCATTGCGATTTT-CAAATATCGCATTGCGAT
224855 TTACTTATTT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
41 63 0.97
42 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (41 bp):
ATCGCATTGCGATTTTCAAATATCGCATTGCGATAGTCAGT
Found at i:224915 original size:21 final size:22
Alignment explanation
Indices: 224865--224915 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
224855 TTACTTATTT
*
224865 GCATTACG-AATTGGGAAAACC
1 GCATTGCGAAATTGGGAAAACC
** *
224886 GCAACGCGAAATT-GGAAAATC
1 GCATTGCGAAATTGGGAAAACC
224907 GCATTGCGA
1 GCATTGCGA
224916 TAGTCATAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (22 bp):
GCATTGCGAAATTGGGAAAACC
Found at i:226917 original size:2 final size:2
Alignment explanation
Indices: 226910--226950 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
226900 AAGAATAGCC
* * *
226910 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
226951 CTTTCTTCCC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (2 bp):
TA
Found at i:229019 original size:11 final size:11
Alignment explanation
Indices: 229005--229030 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
228995 ATATATATAA
229005 TATATATTATT
1 TATATATTATT
229016 TATATATTATT
1 TATATATTATT
229027 TATA
1 TATA
229031 AATTTCGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATATATTATT
Found at i:235612 original size:3 final size:3
Alignment explanation
Indices: 235604--235671 Score: 120
Period size: 3 Copynumber: 23.0 Consensus size: 3
235594 ATGTAATTGT
235604 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
235652 ATA ATA AT- ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA
235672 TTTGTGTAGA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 60 0.97
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:240904 original size:2 final size:2
Alignment explanation
Indices: 240897--240926 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
240887 ATCTTTAAAC
240897 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
240927 ATTACATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:242073 original size:15 final size:15
Alignment explanation
Indices: 242053--242082 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
242043 CTTTTCTTTC
242053 AATTCTGATCTCGGT
1 AATTCTGATCTCGGT
242068 AATTCTGATCTCGGT
1 AATTCTGATCTCGGT
242083 GATAAAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
AATTCTGATCTCGGT
Found at i:249826 original size:3 final size:3
Alignment explanation
Indices: 249818--249847 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
249808 TGATTTTCAA
*
249818 ATT ATT ATT ATC ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
249848 TGTGTAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:250593 original size:43 final size:43
Alignment explanation
Indices: 250544--250628 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 43
250534 TATTTTAATA
* *
250544 ATATATAATAA-ATTGTTAATAAAATTTATATTATTTATTAATTTC
1 ATATA-AATAATATTATTAA-AAAATTAATATT-TTTATTAATTTC
**
250589 ATATAAATAATATTATTAAATTATTAATATTTTTATTAAT
1 ATATAAATAATATTATTAAAAAATTAATATTTTTATTAAT
250629 CGGGAGTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
43 9 0.26
44 14 0.40
45 12 0.34
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (43 bp):
ATATAAATAATATTATTAAAAAATTAATATTTTTATTAATTTC
Found at i:250794 original size:21 final size:21
Alignment explanation
Indices: 250768--250809 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
250758 TAATTCTAAT
250768 ATTTTA-AATATAATAATATTA
1 ATTTTATAATA-AATAATATTA
*
250789 ATTTTATGATAAATAATATTA
1 ATTTTATAATAAATAATATTA
250810 TTTATTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATTTTATAATAAATAATATTA
Found at i:251985 original size:60 final size:60
Alignment explanation
Indices: 251870--251986 Score: 137
Period size: 60 Copynumber: 1.9 Consensus size: 60
251860 GATCATTTTG
* * * *
251870 TAACTTTTAATAGTCGAGTGACTCAACAAAGCAACACTCTATAGTCGGAGAACCATTATA
1 TAACTTTTAATAGTCAAGAGACTCAACAAAGCAACACCCTATAGCCGGAGAACCATTATA
* * * * *
251930 TAACTTTTAATAGTTAAGAGACTTAATAAAGC-ACTACCCTATAGCCGGGGGACCATT
1 TAACTTTTAATAGTCAAGAGACTCAACAAAGCAAC-ACCCTATAGCCGGAGAACCATT
251987 TGTGTACTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 2 0.04
60 45 0.96
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (60 bp):
TAACTTTTAATAGTCAAGAGACTCAACAAAGCAACACCCTATAGCCGGAGAACCATTATA
Found at i:255108 original size:60 final size:60
Alignment explanation
Indices: 255008--255174 Score: 185
Period size: 60 Copynumber: 2.8 Consensus size: 60
254998 AATTAATTTG
* * ** **
255008 GGGATGTAATTTGAATATTCAAAAGTTTGGGGACTAATTTAGAAA-GATTGTCATAGTTTA
1 GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTA-AAATGAGAGTCATAGTTTA
* * * *
255068 GGGATGAAATTAGAATGTTCAAAATTTTAAGGACTGATTTAAAATGAGAGTCGTAGTTTA
1 GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAATGAGAGTCATAGTTTA
* * * *
255128 GGG-TGAAATTAAAATATTTAAAAGTTTAGGGATTAATTTAAAATGAG
1 GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAATGAG
255175 GATAATAATT
Statistics
Matches: 89, Mismatches: 17, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
59 40 0.45
60 49 0.55
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.35
Consensus pattern (60 bp):
GGGATGAAATTAGAATATTCAAAAGTTTAAGGACTAATTTAAAATGAGAGTCATAGTTTA
Found at i:255168 original size:59 final size:60
Alignment explanation
Indices: 255021--255174 Score: 186
Period size: 59 Copynumber: 2.6 Consensus size: 60
255011 ATGTAATTTG
* ** *
255021 AATATTCAAAAGTTTGGGGACTAATTTAGAAA-GATTGTCATAGTTTAGGGATGAAATTAG
1 AATATTCAAAAGTTTAGGGACTAATTTA-AAATGAGAGTCATAGTTTAGGGATGAAATTAA
* * * * *
255081 AATGTTCAAAATTTTAAGGACTGATTTAAAATGAGAGTCGTAGTTTAGGG-TGAAATTAA
1 AATATTCAAAAGTTTAGGGACTAATTTAAAATGAGAGTCATAGTTTAGGGATGAAATTAA
* *
255140 AATATTTAAAAGTTTAGGGATTAATTTAAAATGAG
1 AATATTCAAAAGTTTAGGGACTAATTTAAAATGAG
255175 GATAATAATT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
59 40 0.51
60 38 0.49
ACGTcount: A:0.40, C:0.04, G:0.21, T:0.34
Consensus pattern (60 bp):
AATATTCAAAAGTTTAGGGACTAATTTAAAATGAGAGTCATAGTTTAGGGATGAAATTAA
Found at i:260345 original size:24 final size:24
Alignment explanation
Indices: 260324--260385 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
260314 ATATTCGTAT
260324 ACATATTCATTTATATTTTCGTCA
1 ACATATTCATTTATATTTTCGTCA
260348 ACATATTCATTTATATTTTCGTCA
1 ACATATTCATTTATATTTTCGTCA
260372 ACATATTCATTTAT
1 ACATATTCATTTAT
260386 CGTTAATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.31, C:0.16, G:0.03, T:0.50
Consensus pattern (24 bp):
ACATATTCATTTATATTTTCGTCA
Found at i:265865 original size:2 final size:2
Alignment explanation
Indices: 265858--265913 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
265848 CAAGTACGTA
265858 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
265900 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
265914 GTTACTTTGC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:269822 original size:15 final size:15
Alignment explanation
Indices: 269798--269831 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
269788 TATCAGTGCA
*
269798 ACATAGTCTGCAAGT
1 ACATAATCTGCAAGT
269813 ACATAATCTGCAAGT
1 ACATAATCTGCAAGT
269828 ACAT
1 ACAT
269832 TTAGCTGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (15 bp):
ACATAATCTGCAAGT
Found at i:273950 original size:41 final size:41
Alignment explanation
Indices: 273905--274001 Score: 140
Period size: 41 Copynumber: 2.3 Consensus size: 41
273895 TTTAAATGGG
* *
273905 TACTAAAATGAAACAAAAAGTAAAGTTTTTTAACGGAGGGT
1 TACTAAAATAAAACAAAAACTAAAGTTTTTTAACGGAGGGT
* *
273946 TACTAAAATAAAATAAAAACTAAAGTTTTTTAACGGCGGGT
1 TACTAAAATAAAACAAAAACTAAAGTTTTTTAACGGAGGGT
273987 TACTATGAAATAAAA
1 TACTA--AAATAAAA
274002 ACTAAATTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 42 0.84
43 8 0.16
ACGTcount: A:0.48, C:0.08, G:0.15, T:0.28
Consensus pattern (41 bp):
TACTAAAATAAAACAAAAACTAAAGTTTTTTAACGGAGGGT
Found at i:277677 original size:55 final size:55
Alignment explanation
Indices: 277590--277701 Score: 170
Period size: 55 Copynumber: 2.0 Consensus size: 55
277580 AGTATAGGTA
* ** *
277590 TTAAAACGAATCAAAACCGATAGTTTGGATACTAAACGCATAACTTACCCAAAAT
1 TTAAAACGAACCAAAACCGATAGTTTAAATACTAAACACATAACTTACCCAAAAT
* *
277645 TTAAAACGGACCAAAACCGATAGTTTAAATACTAAACACGTAACTTACCCAAAAT
1 TTAAAACGAACCAAAACCGATAGTTTAAATACTAAACACATAACTTACCCAAAAT
277700 TT
1 TT
277702 TATAGCAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.24
Consensus pattern (55 bp):
TTAAAACGAACCAAAACCGATAGTTTAAATACTAAACACATAACTTACCCAAAAT
Found at i:281048 original size:6 final size:6
Alignment explanation
Indices: 281037--281200 Score: 265
Period size: 6 Copynumber: 27.3 Consensus size: 6
281027 AACTACATCC
* * *
281037 ATCTAT ATCTAT ATCTAT GTCTAT GTCTAT GTCTAT ATCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
* *
281085 ATCTAT ATCTAT ATCTAT GTCTAT ATCTAT ATCTAT GTCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
* *
281133 ATCTAT ATCTAT GTCTAT ATCTAT ATCTAT ATCTAT GTCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
281181 ATCTAT ATCTAT ATCTAT AT
1 ATCTAT ATCTAT ATCTAT AT
281201 ATATCGTGTA
Statistics
Matches: 148, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 148 1.00
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.50
Consensus pattern (6 bp):
ATCTAT
Found at i:281269 original size:21 final size:20
Alignment explanation
Indices: 281239--281288 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
281229 TAAGTGTTGT
* *
281239 AGAATTTTATCTTTTATATGG
1 AGAATATTAT-TTTAATATGG
281260 AGAATATTATTTTAATATGG
1 AGAATATTATTTTAATATGG
*
281280 -GTATATTAT
1 AGAATATTAT
281289 GTATTAAGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 8 0.31
20 9 0.35
21 9 0.35
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (20 bp):
AGAATATTATTTTAATATGG
Found at i:281285 original size:19 final size:19
Alignment explanation
Indices: 281250--281288 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
281240 GAATTTTATC
281250 TTTTATATGGAGAATATTA
1 TTTTATATGGAGAATATTA
*
281269 TTTTAATATGG-GTATATTA
1 TTTT-ATATGGAGAATATTA
281288 T
1 T
281289 GTATTAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (19 bp):
TTTTATATGGAGAATATTA
Found at i:287125 original size:8 final size:9
Alignment explanation
Indices: 287101--287125 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
287091 CAAACTACAT
287101 AATAAAAAC
1 AATAAAAAC
287110 AATAAAAAC
1 AATAAAAAC
287119 AATAAAA
1 AATAAAA
287126 TAGAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (9 bp):
AATAAAAAC
Found at i:287140 original size:27 final size:28
Alignment explanation
Indices: 287110--287169 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
287100 TAATAAAAAC
*
287110 AATAAAAACAATAAAATAGAAA-TATTA
1 AATAAAAACAATAAAATACAAACTATTA
* * * *
287137 AATACAAACGATACAATTCAAACTATTA
1 AATAAAAACAATAAAATACAAACTATTA
287165 AATAA
1 AATAA
287170 TAAAAACATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.63, C:0.10, G:0.03, T:0.23
Consensus pattern (28 bp):
AATAAAAACAATAAAATACAAACTATTA
Found at i:287685 original size:21 final size:21
Alignment explanation
Indices: 287661--287749 Score: 88
Period size: 21 Copynumber: 4.2 Consensus size: 21
287651 AACCCTGCGG
* *
287661 CGGTGGCATCTGAAATGGCTA
1 CGGTGGCATCTAAAATGACTA
* ** *
287682 CGGTGGCATTTAAACCGACTG
1 CGGTGGCATCTAAAATGACTA
** *
287703 TTGTGGCATCTAAAATGGCTA
1 CGGTGGCATCTAAAATGACTA
*
287724 TGGTGGCATCTAAAATGACTA
1 CGGTGGCATCTAAAATGACTA
287745 CGGTG
1 CGGTG
287750 ACGTCTGACC
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (21 bp):
CGGTGGCATCTAAAATGACTA
Found at i:287792 original size:21 final size:21
Alignment explanation
Indices: 287768--287807 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
287758 CCCGACTGTG
287768 GTGCCATCTGAAACGGTTGTT
1 GTGCCATCTGAAACGGTTGTT
* *
287789 GTGCCATCTGCAATGGTTG
1 GTGCCATCTGAAACGGTTG
287808 CAGAATGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.33
Consensus pattern (21 bp):
GTGCCATCTGAAACGGTTGTT
Found at i:290888 original size:117 final size:118
Alignment explanation
Indices: 290681--290898 Score: 359
Period size: 117 Copynumber: 1.9 Consensus size: 118
290671 GTCGATTTGG
* * *
290681 AATAAGTATCGGTTTTTTTCTGCTATTGAAGTCCTTTGAATTGCTACTGAAGTGTAGGATTACTT
1 AATAAGTATCGGTCTTTTTCTGCTATTGAACTCCTTTGAATTACTACTGAAGTGTAGGATTACTT
*
290746 GGATATTCATGTTCTAACAGGCATTCTATCGGGTATGAGTACATCCGCCATGT
66 GGATATTCATGTTCTAACAAGCATTCTATCGGGTATGAGTACATCCGCCATGT
* *
290799 AATAAGTATCGG-CTTTTTCTGGTTTTGAACTCCTTTGAATTACTA-TGGAAGTGTAGGATTACT
1 AATAAGTATCGGTCTTTTTCTGCTATTGAACTCCTTTGAATTACTACT-GAAGTGTAGGATTACT
290862 TGGATATTCATGTTCTAACAAGCATTCTATCGGGTAT
65 TGGATATTCATGTTCTAACAAGCATTCTATCGGGTAT
290899 ATTTCCGTTC
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
116 1 0.01
117 80 0.86
118 12 0.13
ACGTcount: A:0.25, C:0.15, G:0.21, T:0.39
Consensus pattern (118 bp):
AATAAGTATCGGTCTTTTTCTGCTATTGAACTCCTTTGAATTACTACTGAAGTGTAGGATTACTT
GGATATTCATGTTCTAACAAGCATTCTATCGGGTATGAGTACATCCGCCATGT
Found at i:305503 original size:2 final size:2
Alignment explanation
Indices: 305496--305546 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
305486 TCTCTTTTTC
305496 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
305538 TA TA TA TA T
1 TA TA TA TA T
305547 CAGAAAATTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:306715 original size:31 final size:30
Alignment explanation
Indices: 306680--306765 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 30
306670 CTTATATAAT
*
306680 AAATAAGTACCTAAAATTATAATTTTTGTCA
1 AAATAAGTACCTAAAATTAT-ATTTTGGTCA
* *
306711 AAATATA-CACCT-AAATTATCTTTTGGTCA
1 AAATA-AGTACCTAAAATTATATTTTGGTCA
* *
306740 AAATAAGTACATAAAATATTTATTTT
1 AAATAAGTACCTAAAAT-TATATTTT
306766 TATTTAAGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
28 1 0.02
29 16 0.36
30 11 0.25
31 15 0.34
32 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (30 bp):
AAATAAGTACCTAAAATTATATTTTGGTCA
Found at i:306905 original size:31 final size:30
Alignment explanation
Indices: 306867--306938 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
306857 TGACATAGAA
306867 AACTTTAGATA-TCTATATTGACCAAAAAAAT
1 AACTTTAGATACT-TATATTGACC-AAAAAAT
* *
306898 AACTTTAGGTACTTATTTTGACCAAAAAAT
1 AACTTTAGATACTTATATTGACCAAAAAAT
306928 -ACTTTAGATAC
1 AACTTTAGATAC
306939 CTAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 10 0.27
30 7 0.19
31 19 0.51
32 1 0.03
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (30 bp):
AACTTTAGATACTTATATTGACCAAAAAAT
Found at i:306918 original size:59 final size:59
Alignment explanation
Indices: 306847--306975 Score: 140
Period size: 60 Copynumber: 2.2 Consensus size: 59
306837 GAAAGTTCAT
* * * *
306847 GTACCTATTTTGA-CATAGAAA-ACTTTAGATATCTATATTGACCAAAA-AAATA-ACTTTAG
1 GTACTTATTTTGACCA-AAAAATACTTTAGATACCTA-AATGA--AAAAGAAATATACTTTAG
*
306906 GTACTTATTTTGACCAAAAAATACTTTAGATACCTAAATGAAAAAGTGAATATACTTTAG
1 GTACTTATTTTGACCAAAAAATACTTTAGATACCTAAATGAAAAAG-AAATATACTTTAG
306966 GTACTTATTT
1 GTACTTATTT
306976 GTGATATAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
57 4 0.07
59 24 0.40
60 32 0.53
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36
Consensus pattern (59 bp):
GTACTTATTTTGACCAAAAAATACTTTAGATACCTAAATGAAAAAGAAATATACTTTAG
Found at i:321207 original size:2 final size:2
Alignment explanation
Indices: 321202--321230 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
321192 TCTGTGTGCT
321202 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
321231 ATTTGTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:323794 original size:2 final size:2
Alignment explanation
Indices: 323787--323818 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
323777 AAGCACATAC
323787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
323819 TGGGGGCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:325017 original size:3 final size:3
Alignment explanation
Indices: 325011--325035 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
325001 AATAATAATA
325011 ATG ATG ATG ATG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG A
325036 GGAGGGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (3 bp):
ATG
Found at i:331692 original size:60 final size:60
Alignment explanation
Indices: 331570--331703 Score: 150
Period size: 60 Copynumber: 2.2 Consensus size: 60
331560 TCAAGTGATC
* * * *
331570 ATTTTATAACTTTTAATAGTCGAGGAACTCAACAAAGCAACACTCTTTAGTTGAAGGACT
1 ATTTTATAACTTTTAATAGTCAAGGAACTCAACAAAACAACACTCTATAGTAGAAGGACT
* *
331630 ATTTTATAACTTTTAATAGTCAA-GAGACTTAACAAAACAACA-TCCTATAGCTAG-AGGTCT
1 ATTTTATAACTTTTAATAGTCAAGGA-ACTCAACAAAACAACACT-CTATAG-TAGAAGGACT
331690 A-TTTATATACTTTT
1 ATTTTATA-ACTTTT
331704 TACCCTTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
59 9 0.14
60 53 0.83
61 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAGTCAAGGAACTCAACAAAACAACACTCTATAGTAGAAGGACT
Found at i:332301 original size:3 final size:3
Alignment explanation
Indices: 332293--332341 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
332283 CTTTTTTGTA
**
332293 TAT TAT TAT TAT CGT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
332341 T
1 T
332342 TAATTTACAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:332825 original size:25 final size:25
Alignment explanation
Indices: 332789--332838 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
332779 CATTAAAATA
*
332789 GTCCTAAGTCCCTAAATATTCGGCT
1 GTCCTAAATCCCTAAATATTCGGCT
332814 GTCCTAAATCCCTAAATATTCGGCT
1 GTCCTAAATCCCTAAATATTCGGCT
332839 TTTGGTACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (25 bp):
GTCCTAAATCCCTAAATATTCGGCT
Found at i:335335 original size:34 final size:37
Alignment explanation
Indices: 335268--335345 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 37
335258 CAACACACTG
335268 TATTTCACCAATACAATAATAACACACATTATTATTA
1 TATTTCACCAATACAATAATAACACACATTATTATTA
*
335305 TATTTCACCAATACAATAATAACACATATTATTATTA
1 TATTTCACCAATACAATAATAACACACATTATTATTA
335342 TATT
1 TATT
335346 AATAAATGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (37 bp):
TATTTCACCAATACAATAATAACACACATTATTATTA
Found at i:341892 original size:42 final size:42
Alignment explanation
Indices: 341846--341976 Score: 208
Period size: 42 Copynumber: 3.1 Consensus size: 42
341836 TCAAGAAACT
* * ** *
341846 CCATCACATGGAAGCGGTGGCGGCTACGACCCAACACCGACA
1 CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGACA
*
341888 CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGATA
1 CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGACA
341930 CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGACA
1 CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGACA
341972 CCATC
1 CCATC
341977 CGGTGGGGAA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.28, C:0.37, G:0.22, T:0.12
Consensus pattern (42 bp):
CCATCGCATGGAAGCCGTGATGGCTACCACCCAACACCGACA
Found at i:343886 original size:2 final size:2
Alignment explanation
Indices: 343873--343918 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
343863 TTAAACATAA
*
343873 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
343915 AT AT
1 AT AT
343919 TTAAAGAGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:344093 original size:21 final size:21
Alignment explanation
Indices: 344069--344121 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
344059 GTTTCCAGAT
344069 TCGCAATGCGAACATCGACTA
1 TCGCAATGCGAACATCGACTA
* *
344090 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACATCGACTA
344111 TCGCAATGCGA
1 TCGCAATGCGA
344122 TTTTCCAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (21 bp):
TCGCAATGCGAACATCGACTA
Found at i:344158 original size:21 final size:21
Alignment explanation
Indices: 344132--344265 Score: 202
Period size: 21 Copynumber: 6.4 Consensus size: 21
344122 TTTTCCAATT
344132 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
344153 CGTTGCGATAGTCCAAGTT-T
1 CGTTGCGATAGTCCAAGTTCG
344173 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
344194 CGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
*
344215 CGTTGCGATTTATTCCAAGTT--
1 CGTTGCGA--TAGTCCAAGTTCG
*
344236 CGTTGCGATAGTCAAAGTTCG
1 CGTTGCGATAGTCCAAGTTCG
344257 CGTTGCGAT
1 CGTTGCGAT
344266 TTATTCCAAA
Statistics
Matches: 103, Mismatches: 5, Indels: 10
0.87 0.04 0.08
Matches are distributed among these distances:
19 9 0.09
20 19 0.18
21 65 0.63
23 10 0.10
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCG
Found at i:344181 original size:41 final size:42
Alignment explanation
Indices: 344132--344265 Score: 202
Period size: 41 Copynumber: 3.2 Consensus size: 42
344122 TTTTCCAATT
*
344132 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAGTT-T
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAGTTCG
344173 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAGTTCG
1 CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAGTTCG
* *
344215 CGTTGCGATTTATTCCAAGTT--CGTTGCGATAGTCAAAGTTCG
1 CGTTGCGA--TAGTCCAAGTTCGCGTTGCGATAGTCCAAGTTCG
344257 CGTTGCGAT
1 CGTTGCGAT
344266 TTATTCCAAA
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
40 1 0.01
41 40 0.46
42 36 0.41
44 10 0.11
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (42 bp):
CGTTGCGATAGTCCAAGTTCGCGTTGCGATAGTCCAAGTTCG
Found at i:344280 original size:42 final size:42
Alignment explanation
Indices: 344143--344281 Score: 185
Period size: 42 Copynumber: 3.3 Consensus size: 42
344133 GTTGCGATAG
* *
344143 TCCAAGTTCGCGTTGCGATAGTCCAAGTT-TCGTTGCGA--TAG
1 TCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
344184 TCCAAGTTCGCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
*
344228 TCCAAGTTCGTTGCGATAGTCAAAGTTCGCGTTGCGATTTAT
1 TCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
*
344270 TCCAAATTCGTT
1 TCCAAGTTCGTT
344282 TGATAGTTCA
Statistics
Matches: 91, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
41 29 0.32
42 52 0.57
44 10 0.11
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (42 bp):
TCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTAT
Found at i:344281 original size:21 final size:21
Alignment explanation
Indices: 344215--344281 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
344205 TCCAAGTTCG
*
344215 CGTTGCGATTTATTCCAAGTT
1 CGTTGCGATTTATTCCAAATT
*
344236 CGTTGCGA--TAGT-CAAAGTT
1 CGTTGCGATTTATTCCAAA-TT
344255 CGCGTTGCGATTTATTCCAAATT
1 --CGTTGCGATTTATTCCAAATT
344278 CGTT
1 CGTT
344282 TGATAGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
18 3 0.08
19 5 0.14
21 20 0.54
23 5 0.14
24 4 0.11
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (21 bp):
CGTTGCGATTTATTCCAAATT
Found at i:345590 original size:64 final size:67
Alignment explanation
Indices: 345522--345649 Score: 201
Period size: 64 Copynumber: 2.0 Consensus size: 67
345512 TTTAAAAAGA
345522 AAACATCGAATAGGATTTATGCATCGATGCATAAG-G-AGTGCATCGATGCAT-CC-CCATTAAA
1 AAACATCGAATAGGATTTATGCATCGATGCAT-AGTGTAGTGCATCGATGCATACCTCCATTAAA
345583 TAC
65 TAC
* *
345586 AAACATCGAATATGATTTATGCATCGATGCATGGTGTAGTGCATCGATGCATACCTCCATTAAA
1 AAACATCGAATAGGATTTATGCATCGATGCATAGTGTAGTGCATCGATGCATACCTCCATTAAA
345650 AGATGAAAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
63 1 0.02
64 32 0.55
65 15 0.26
66 2 0.03
67 8 0.14
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (67 bp):
AAACATCGAATAGGATTTATGCATCGATGCATAGTGTAGTGCATCGATGCATACCTCCATTAAAT
AC
Found at i:346981 original size:31 final size:31
Alignment explanation
Indices: 346943--347096 Score: 265
Period size: 31 Copynumber: 5.0 Consensus size: 31
346933 CCCGAAGGAC
* *
346943 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
346974 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
347005 CAGTCCATATGTCCCGAAGAACATAAGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
347036 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
347067 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
347097 CCCTCGACCC
Statistics
Matches: 118, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
31 117 0.99
32 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:351370 original size:31 final size:31
Alignment explanation
Indices: 351331--351453 Score: 203
Period size: 31 Copynumber: 4.0 Consensus size: 31
351321 CCCGAATGAC
* *
351331 CAGTCCATA-GATTCCGAAGAACCTAGGTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
*
351362 TAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
351393 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
351424 CAGTCCATATGTCCCGAAGAACATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
351454 CCCTCGACCC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
31 86 0.99
32 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:353047 original size:103 final size:103
Alignment explanation
Indices: 352863--353074 Score: 388
Period size: 103 Copynumber: 2.1 Consensus size: 103
352853 AGGGTCTATT
* *
352863 TGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGATACATACTTGA
1 TGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAGGTCTGGTGAGACACATACTTGA
352928 TCCTTGGCATATGTATATGATTCTTAAGGAATGATATG
66 TCCTTGGCATATGTATATGATTCTTAAGGAATGATATG
* *
352966 TGGTTCTTCGGGACATATATGTATTTTTTGGAACATGTATGAGGTCTGGTGAGACACATACTTGA
1 TGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAGGTCTGGTGAGACACATACTTGA
353031 TCCTTGGCATATGTATATGATTCTTAAGGAATGATATG
66 TCCTTGGCATATGTATATGATTCTTAAGGAATGATATG
353069 TGGTCC
1 TGGTCC
353075 ATATGGGCAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 104 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (103 bp):
TGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAGGTCTGGTGAGACACATACTTGA
TCCTTGGCATATGTATATGATTCTTAAGGAATGATATG
Found at i:353126 original size:23 final size:23
Alignment explanation
Indices: 353093--353144 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
353083 ATTATTATAT
353093 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
353116 GGCACTCCGGTGTAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
353139 GGCACT
1 GGCACT
353145 TATGTGCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:353155 original size:23 final size:23
Alignment explanation
Indices: 353093--353155 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
353083 ATTATTATAT
353093 GGCACT-ACGGTGCAATTCTACGC
1 GGCACTCA-GGTGCAATTCTACGC
* * *
353116 GGCACTCCGGTGTAATTCTACGT
1 GGCACTCAGGTGCAATTCTACGC
* *
353139 GGCACTTATGTGCAATT
1 GGCACTCAGGTGCAATT
353156 ATATGAGCTA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (23 bp):
GGCACTCAGGTGCAATTCTACGC
Found at i:357105 original size:44 final size:42
Alignment explanation
Indices: 357036--357164 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 42
357026 AACTCAAGAA
* * * *
357036 ACACCATCACATGGAGGCGGTGGTGGCTACGACGACCGACACCG
1 ACACCATCGCATGGAAGCGGTGGTGGCTACCAC--CCGAAACCG
*
357080 ACACCATCGCATGGAAGC-GTGGGTGGCTACCACCCTAAACCG
1 ACACCATCGCATGGAAGCGGT-GGTGGCTACCACCCGAAACCG
* **
357122 ACACCATCGCATGGAAGCGATGGTAACTACCACCC-AACACCG
1 ACACCATCGCATGGAAGCGGTGGTGGCTACCACCCGAA-ACCG
357164 A
1 A
357165 AACCTTCCGG
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.03
42 42 0.57
43 3 0.04
44 27 0.36
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (42 bp):
ACACCATCGCATGGAAGCGGTGGTGGCTACCACCCGAAACCG
Found at i:359103 original size:25 final size:26
Alignment explanation
Indices: 359073--359125 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
359063 GTGATAAAAT
359073 ATTTTTATC-TTTTAAAATTTTATAA
1 ATTTTTATCTTTTTAAAATTTTATAA
*
359098 ATTTTTATCTTTTTTAAATTTTATAA
1 ATTTTTATCTTTTTAAAATTTTATAA
359124 AT
1 AT
359126 GAAACTTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTTTATCTTTTTAAAATTTTATAA
Found at i:364653 original size:21 final size:21
Alignment explanation
Indices: 364629--364668 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
364619 TGGTCGGAGT
*
364629 ACGGCGGATGGCAAGCGACGG
1 ACGGCGGACGGCAAGCGACGG
* *
364650 ACGGTGGACGGCTAGCGAC
1 ACGGCGGACGGCAAGCGAC
364669 AGATGACGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.25, G:0.45, T:0.07
Consensus pattern (21 bp):
ACGGCGGACGGCAAGCGACGG
Found at i:368557 original size:31 final size:31
Alignment explanation
Indices: 368519--368582 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
368509 CTTTAATTGG
*
368519 AAGGAAATTAAAAATAAAAGGGCTAAAGTGA
1 AAGGAAATTAAAAATAAAAGGGCTAAAATGA
* * *
368550 AAGGAAATTACAAATACAATGGCTAAAATGA
1 AAGGAAATTAAAAATAAAAGGGCTAAAATGA
368581 AA
1 AA
368583 CTCTAATACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.58, C:0.06, G:0.19, T:0.17
Consensus pattern (31 bp):
AAGGAAATTAAAAATAAAAGGGCTAAAATGA
Done.