genome.fa.s4457.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004457.1 Hibiscus syriacus cultivar Beakdansim tig00009816_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76242

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14158--14242	22	3.9	22	73	14	77	23	36	24	15	1.93
14158--14220	22	2.8	22	88	7	83	22	36	25	15	1.94
14160--14241	23	3.8	21	75	16	69	23	37	24	14	1.92
19661--19982	33	9.9	33	79	7	286	40	16	13	29	1.87
19764--19811	18	2.9	17	76	11	55	39	18	10	31	1.85
19661--19985	66	5.0	66	78	8	324	40	16	13	29	1.87
19868--19925	28	2.1	28	90	0	89	32	17	18	31	1.94
19764--19985	94	2.3	97	85	3	306	38	17	14	28	1.90
20337--20412	24	3.2	25	78	10	79	47	18	9	25	1.78
25597--25680	42	2.0	42	86	8	120	55	7	4	32	1.48
25866--25895	8	3.6	8	91	8	51	83	0	3	13	0.77
26165--26207	18	2.5	17	85	7	61	67	2	4	25	1.22
27436--28189	106	7.0	106	87	3	942	24	18	22	35	1.95
27490--28189	216	3.3	216	89	1	1014	24	18	22	35	1.95
28952--29023	36	2.0	36	89	5	110	38	15	19	26	1.91
48777--48875	50	2.0	51	84	6	130	22	17	25	35	1.95
49058--49095	20	1.9	20	88	0	58	31	5	34	28	1.80
49577--49622	2	23.0	2	100	0	92	50	0	0	50	1.00
58053--58092	21	1.9	21	94	0	71	20	37	30	12	1.89
63860--63939	21	3.8	21	74	12	65	23	37	23	15	1.93
64299--64346	24	1.9	26	87	8	73	47	4	4	43	1.41
69306--69625	33	9.9	33	78	8	268	40	16	13	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69342--69493	67	2.3	66	81	6	173	41	19	11	27	1.85
69409--69456	18	2.9	17	76	11	55	39	18	10	31	1.85
69306--69628	66	5.0	66	77	7	313	39	17	13	29	1.87
69513--69602	28	3.1	28	80	13	92	35	16	16	31	1.92
69975--70050	24	3.2	25	78	10	79	47	18	9	25	1.78
75190--75268	39	2.1	38	86	11	108	55	7	5	31	1.50

Tables:   1

The End!