genome.fa.s4458.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004458.1 Hibiscus syriacus cultivar Beakdansim tig00009830_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57720

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2896--3008	50	2.3	50	90	0	172	19	30	36	14	1.91
4824--4866	13	3.1	15	83	12	56	55	0	0	44	0.99
5500--5534	17	2.2	17	90	10	56	57	0	0	42	0.99
14363--14467	19	5.2	19	80	13	111	35	5	27	31	1.80
17297--17369	3	24.0	3	84	13	96	32	0	2	64	1.08
22496--22536	20	2.0	20	95	0	73	29	21	12	36	1.90
24266--24411	4	37.0	4	94	2	260	50	23	0	26	1.50
24794--25091	157	1.9	157	84	4	395	30	17	12	39	1.86
24956--25194	105	2.3	102	82	6	277	29	19	13	37	1.90
25128--25258	36	3.7	34	80	6	129	31	18	14	35	1.91
25162--25260	34	2.8	35	83	4	128	33	17	13	36	1.88
25509--25638	29	4.6	29	88	2	167	34	10	13	41	1.78
25502--25616	29	4.0	29	91	3	178	30	10	13	45	1.78
25502--25616	57	2.0	59	89	3	180	30	10	13	45	1.78
25736--25869	30	4.3	30	75	13	135	32	10	14	42	1.79
25752--25966	67	3.3	67	86	5	287	29	12	13	45	1.80
25787--25913	37	3.6	37	69	16	117	29	11	13	44	1.79
26025--26250	120	1.9	121	81	6	280	30	14	12	42	1.83
26146--26272	66	1.9	66	88	1	193	32	14	11	42	1.80
26254--26333	40	2.0	40	87	4	117	31	20	11	37	1.87
26429--26472	15	2.9	15	93	0	70	31	20	4	43	1.72
26710--26805	36	2.7	34	79	10	95	30	16	12	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26731--26805	35	2.1	36	85	7	100	36	18	10	34	1.86
27156--27519	40	8.4	41	70	15	218	24	34	18	21	1.96
27138--27619	133	3.6	133	92	0	741	25	32	19	23	1.97
27545--27666	40	3.0	40	72	7	120	24	27	18	29	1.98
27830--27896	3	22.0	3	81	14	75	31	0	2	65	1.07
29045--29091	20	2.4	19	80	16	51	25	2	14	57	1.49
32129--32214	29	3.0	28	81	5	100	15	33	30	20	1.93
32295--32356	31	2.0	31	90	0	97	25	35	14	24	1.93
35257--35339	42	2.0	42	85	4	114	36	2	14	46	1.58
35326--35359	18	1.9	18	88	5	52	35	5	2	55	1.39
46105--46158	26	2.2	23	83	9	63	35	3	7	53	1.47
46112--46172	26	2.3	27	83	5	81	32	6	8	52	1.57
51538--51599	27	2.3	27	83	8	74	32	11	4	51	1.59
53966--54035	39	1.9	37	83	13	92	58	10	7	24	1.55
56182--56252	29	2.5	29	77	11	74	60	1	2	35	1.20

Tables:   1

The End!