genome.fa.s4459.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004459.1 Hibiscus syriacus cultivar Beakdansim tig00009831_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41319

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642--1219	36	16.9	36	68	17	202	40	12	20	26	1.89
733--1229	36	14.5	36	72	14	343	39	13	20	26	1.90
642--1283	171	3.8	172	88	6	966	40	12	20	26	1.88
938--1183	134	1.9	131	81	7	300	39	13	19	27	1.90
1213--1326	29	3.6	29	73	24	113	36	10	19	33	1.86
1243--1384	39	3.9	39	75	20	171	38	11	20	29	1.87
1214--1365	68	2.2	68	100	0	304	37	10	19	32	1.86
2217--2310	32	2.9	32	88	3	136	36	20	12	30	1.90
2212--2316	32	3.3	31	84	4	129	36	20	14	28	1.92
3228--3355	68	2.0	62	84	14	163	25	14	21	38	1.92
3393--3453	26	2.3	27	80	13	72	3	18	1	77	0.99
3415--3454	17	2.4	17	82	0	53	0	17	5	77	0.94
5382--5415	17	1.9	18	88	5	52	76	2	14	5	1.09
6486--6548	28	2.4	24	80	15	63	73	3	11	12	1.22
6798--6830	2	16.5	2	100	0	66	51	0	0	48	1.00
7029--7067	14	2.7	15	88	4	53	71	0	0	28	0.86
28686--28718	2	16.5	2	100	0	66	51	0	0	48	1.00
33642--33683	20	2.1	20	86	0	57	30	30	7	30	1.84
33830--33878	20	2.5	20	82	0	62	26	24	14	34	1.94
33967--34026	21	2.8	21	90	7	86	26	38	6	28	1.81
34667--34700	12	2.8	12	90	0	50	55	29	0	14	1.40
34825--34878	24	2.3	23	90	6	90	22	18	20	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37384--37458	39	1.9	39	94	5	134	30	13	17	38	1.88
37533--37577	20	2.2	20	84	0	54	53	22	8	15	1.69
37601--37645	19	2.3	19	88	3	63	20	15	24	40	1.91
38947--39060	21	5.5	21	78	8	90	24	18	37	19	1.94
38947--39081	42	3.2	41	78	8	139	25	18	36	19	1.94
41138--41181	19	2.2	20	92	4	72	45	25	18	11	1.82
41192--41225	14	2.4	14	90	0	50	11	17	23	47	1.81
41206--41245	21	1.9	21	94	0	71	17	10	20	52	1.72

Tables:   1

The End!