genome.fa.s446.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000446.1 Hibiscus syriacus cultivar Beakdansim tig00000815_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71124

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1301--1342	13	3.4	13	80	9	52	38	0	0	61	0.96
2584--2802	108	2.1	105	90	4	341	43	7	15	33	1.75
5768--5853	36	2.4	36	86	0	118	27	16	15	40	1.88
7679--7724	24	1.9	24	90	0	74	30	0	2	67	1.03
7738--7775	2	19.5	2	94	5	69	50	0	0	50	1.00
9759--9790	14	2.3	14	100	0	64	9	0	40	50	1.35
10034--10083	22	2.3	22	89	0	73	30	22	22	26	1.99
18607--18664	28	2.1	28	83	0	71	17	8	6	67	1.39
18685--18785	23	4.4	23	76	0	94	39	22	13	23	1.90
18793--18854	23	2.7	23	87	2	88	37	17	19	25	1.94
19595--19779	39	4.7	39	82	10	207	45	3	7	43	1.49
19595--19791	76	2.5	79	82	11	210	46	3	6	43	1.47
19767--19877	37	3.0	37	89	1	159	40	0	7	51	1.36
19703--19843	64	2.2	65	88	3	205	41	2	7	47	1.47
19703--19873	64	2.7	63	81	8	150	40	2	7	49	1.44
19924--19975	26	2.0	27	84	3	70	13	9	1	75	1.14
20773--20891	55	2.3	55	77	15	126	22	5	4	68	1.27
20873--20908	15	2.3	15	90	4	54	16	11	0	72	1.12
23452--23530	21	3.7	21	79	17	76	22	34	20	22	1.97
23949--24018	34	2.1	32	86	5	95	31	15	30	22	1.95
26942--27063	21	5.7	21	79	6	129	23	38	16	21	1.93
26942--27063	64	1.9	64	83	6	158	23	38	16	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33342--33603	38	6.6	38	80	13	228	46	2	7	43	1.45
33453--33505	26	2.0	26	81	3	61	45	3	3	47	1.39
33336--33606	76	3.4	77	84	8	323	46	2	7	43	1.45
47720--47796	3	26.0	3	82	12	97	61	0	0	38	0.96
47730--47804	12	6.3	12	84	15	86	62	0	0	37	0.95
48039--48097	17	3.4	17	68	25	50	15	25	11	47	1.79
48141--48515	113	3.3	111	82	8	450	29	18	15	36	1.91
48422--48585	73	2.2	73	83	0	193	34	15	17	32	1.91
48196--48817	300	2.1	299	85	1	818	30	16	15	37	1.90
48495--49082	227	2.6	227	98	0	1140	28	17	14	39	1.89
48495--49082	113	5.2	113	97	0	1104	28	17	14	39	1.89
49520--49596	22	3.5	22	90	0	127	38	12	12	35	1.82
49956--50121	54	3.1	54	93	0	287	25	22	13	38	1.90
52185--52452	92	2.9	91	87	2	385	35	22	13	29	1.92
54740--54780	11	3.7	11	86	0	64	0	14	0	85	0.60
54734--54775	10	4.4	10	82	11	61	0	16	0	83	0.65
54734--54788	18	3.1	18	80	15	60	0	18	0	81	0.68
58072--58125	14	3.8	14	80	2	54	50	9	14	25	1.73
61717--61791	3	26.0	3	85	12	104	62	0	0	37	0.95
64324--64348	3	8.3	3	100	0	50	32	0	0	68	0.90
64728--65066	80	4.1	82	77	10	334	32	16	16	34	1.92
66191--66250	31	1.9	31	89	0	93	30	8	6	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69669--69729	23	2.7	23	87	7	88	18	26	26	29	1.98

Tables:   1

The End!