Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004460.1 Hibiscus syriacus cultivar Beakdansim tig00009832_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51212
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Found at i:3725 original size:103 final size:103
Alignment explanation
Indices: 3546--3748 Score: 325
Period size: 103 Copynumber: 2.0 Consensus size: 103
3536 TGCACTATGC
* * * *
3546 TATCATTCCTTAAGAATCATATACATATACTAGGGATCAAGTATGTGTCTCACCTGACTTCACAC
1 TATCATTCATTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACAC
* *
3611 ATGTTCCAAAGAATACATATATGTCCCGAAGGACCACA
66 ATATTCCAAAGAATACATATATGTCCCGAAAGACCACA
* *
3649 TATCATTCATTAAGAATCATATACATATGCCAAGGATCATGTATGTGTCTCACCAGACTTCACAC
1 TATCATTCATTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACAC
*
3714 ATATTCCAAAGAATATATATATGTCCCGAAAGACC
66 ATATTCCAAAGAATACATATATGTCCCGAAAGACC
3749 GCGTAGACCC
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 91 1.00
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.29
Consensus pattern (103 bp):
TATCATTCATTAAGAATCATATACATATACCAAGGATCAAGTATGTGTCTCACCAGACTTCACAC
ATATTCCAAAGAATACATATATGTCCCGAAAGACCACA
Found at i:6250 original size:65 final size:65
Alignment explanation
Indices: 6176--6304 Score: 161
Period size: 65 Copynumber: 2.0 Consensus size: 65
6166 GGGATGTTAC
* ** * *
6176 AGTTTCTCTTGAAACATAAA-CATTGAAAATATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGA
1 AGTTTCTCTTAAAACA-AAATCATTGAAAATATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
6240 T
65 T
* * * *
6241 AGTTTCTCTTAAAACAAAATCTTTGAATATGTTTCCTTTGAAACAAATTTCGTCTCCCTTGAGA
1 AGTTTCTCTTAAAACAAAATCATTGAAAATATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGA
6305 CATTTTTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 3 0.06
65 51 0.94
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.40
Consensus pattern (65 bp):
AGTTTCTCTTAAAACAAAATCATTGAAAATATTTCCCTTGAAACAAATTTCGTCTCCCTTGAGAT
Found at i:6439 original size:101 final size:102
Alignment explanation
Indices: 6324--6580 Score: 390
Period size: 102 Copynumber: 2.5 Consensus size: 102
6314 TGGAACTAAG
* * * *
6324 TTTTCTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTAAAAACATTTCCCTTGAAATGAA
1 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAA
* *
6389 -TTTGTATATCTTGAGATATGTTCCCTTGAAAAAAAA
66 TTTTGCATATCTTGAGATAGGTTCCCTTGAAAAAAAA
6425 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAA
1 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAA
* * *
6490 TTTTGCCTCTCTTGAGATAGGTTCCCTTGAAACAAAA
66 TTTTGCATATCTTGAGATAGGTTCCCTTGAAAAAAAA
* * *
6527 TTTTGTCTCCATTGAGACAGTTTCTCTTGAAGCATAAACTTTGAAAACAGTTTC
1 TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA-TTTC
6581 ATTTGAAACA
Statistics
Matches: 142, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
101 61 0.43
102 77 0.54
103 4 0.03
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (102 bp):
TTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAA
TTTTGCATATCTTGAGATAGGTTCCCTTGAAAAAAAA
Found at i:6542 original size:37 final size:36
Alignment explanation
Indices: 6475--6557 Score: 87
Period size: 37 Copynumber: 2.3 Consensus size: 36
6465 TTGAAAACAT
** *
6475 TTCCCTTGAAATGAATTTTGCCTCTCTTGAGATAGG
1 TTCCCTTGAAAAAAATTTTGCCTCTCTTGAGACAGG
* *
6511 TTCCCTTGAAACAAAATTTTGTCTC-CATTGAGACAGT
1 TTCCCTTGAAA-AAAATTTTGCCTCTC-TTGAGACAGG
*
6548 TTCTCTTGAA
1 TTCCCTTGAA
6558 GCATAAACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
36 12 0.31
37 27 0.69
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (36 bp):
TTCCCTTGAAAAAAATTTTGCCTCTCTTGAGACAGG
Found at i:6577 original size:30 final size:30
Alignment explanation
Indices: 6543--6601 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
6533 CTCCATTGAG
*
6543 ACAGTTTC-TCTTGAAGCATAAA-CTTTGAAA
1 ACAGTTTCAT-TTGAAACA-AAATCTTTGAAA
6573 ACAGTTTCATTTGAAACAAAATCTTTGAA
1 ACAGTTTCATTTGAAACAAAATCTTTGAA
6602 TATGTTTTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 3 0.12
30 22 0.85
31 1 0.04
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (30 bp):
ACAGTTTCATTTGAAACAAAATCTTTGAAA
Found at i:6993 original size:84 final size:84
Alignment explanation
Indices: 6764--7010 Score: 246
Period size: 84 Copynumber: 2.9 Consensus size: 84
6754 AACCAAACCC
* * * * * * * *
6764 TCGAGTTCGATTACACTCATCTTCGAGGGCACACCATTTACAATATAACTCAAGGCTAGAAGGGT
1 TCGAGTTCGACTACGCTCAGC-TCTAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGGGT
* * *
6829 TATTTGTCACCAAAAGACCT
65 TATCTGTCAACTAAAGACCT
* * * * * * * * * * *
6849 TCGAGTTTGACTATGCTCGGCTCTAAGGGACATCATTTGCAGCATAGCTTAAGTCGAGAAGGGCT
1 TCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGGGTT
*
6914 ATCTGCCAACTAAAGACCT
66 ATCTGTCAACTAAAGACCT
*
6933 TCGAGTTCGACTACGCTCAGCTCCT-AGGCACATTATTTACAACATAACTCAAGGCAAGAAGGGT
1 TCGAGTTCGACTACGCTCAGCT-CTAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGGGT
6997 TATCTGTCAA-TAAA
65 TATCTGTCAACTAAA
7011 ATTGTCGAGT
Statistics
Matches: 126, Mismatches: 35, Indels: 4
0.76 0.21 0.02
Matches are distributed among these distances:
83 4 0.03
84 105 0.83
85 17 0.13
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (84 bp):
TCGAGTTCGACTACGCTCAGCTCTAAGGCACATCATTTACAACATAACTCAAGGCAAGAAGGGTT
ATCTGTCAACTAAAGACCT
Found at i:7860 original size:14 final size:15
Alignment explanation
Indices: 7827--7865 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
7817 TACGTTTACG
* *
7827 TTTTAATTATTATTA
1 TTTTATTTATTATAA
7842 TTTTATTTATT-TAA
1 TTTTATTTATTATAA
7856 TTTTATTTAT
1 TTTTATTTAT
7866 ACGCACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATTTATTATAA
Found at i:7974 original size:2 final size:2
Alignment explanation
Indices: 7969--8031 Score: 76
Period size: 2 Copynumber: 32.5 Consensus size: 2
7959 TTTACTTTAG
* * * *
7969 TA TA TA TA TA TA TA TA TA TA TA TA T- TT TA GA T- TA CA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8009 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
8032 GTTAATTTTC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
1 2 0.04
2 52 0.96
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:8277 original size:23 final size:23
Alignment explanation
Indices: 8238--8299 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
8228 TAGTATTTTA
*
8238 TTTATTTCATTTGTTTTTATGAAC-
1 TTTATTT-ATTTATTTTTATG-ACT
*
8262 TTTATTTATTTA-TTTTATGTCT
1 TTTATTTATTTATTTTTATGACT
8284 TTTATTTTATTTATTT
1 TTTA-TTTATTTATTT
8300 ATTTTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 11 0.33
23 12 0.36
24 9 0.27
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (23 bp):
TTTATTTATTTATTTTTATGACT
Found at i:9893 original size:17 final size:17
Alignment explanation
Indices: 9871--9903 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9861 TTTAATTAAA
9871 ATTCA-TAAACATATTTT
1 ATTCATTAAAC-TATTTT
9888 ATTCATTAAACTATTT
1 ATTCATTAAACTATTT
9904 AATTTTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTCATTAAACTATTTT
Found at i:10016 original size:18 final size:17
Alignment explanation
Indices: 9989--10022 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
9979 ATACTTATTT
9989 ATATAAAATATAATATA
1 ATATAAAATATAATATA
10006 ATATGAAAATATAATAT
1 ATAT-AAAATATAATAT
10023 TGTGGTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
ATATAAAATATAATATA
Found at i:10543 original size:13 final size:13
Alignment explanation
Indices: 10525--10549 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10515 ATTAATGCGG
10525 TAAAAATATTTTT
1 TAAAAATATTTTT
10538 TAAAAATATTTT
1 TAAAAATATTTT
10550 AAAGAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAAAAATATTTTT
Found at i:13429 original size:29 final size:29
Alignment explanation
Indices: 13394--13479 Score: 145
Period size: 29 Copynumber: 2.9 Consensus size: 29
13384 AAACTAAATT
*
13394 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
13423 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
13452 GATGTCATTGCTTACATCAATTTAATTA
1 GATGTCATTGCTTACATC-ATTTAATTA
13480 GGTGAGAGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
29 45 0.83
30 9 0.17
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:18191 original size:29 final size:29
Alignment explanation
Indices: 18156--18241 Score: 145
Period size: 29 Copynumber: 2.9 Consensus size: 29
18146 AAACTAAATT
*
18156 GATGTCATTACTTACATCATTTAATTAAA
1 GATGTCATTGCTTACATCATTTAATTAAA
*
18185 GATGTCATTGCTTACATCATTTAATTAAT
1 GATGTCATTGCTTACATCATTTAATTAAA
18214 GATGTCATTGCTTACATCAATTTAATTA
1 GATGTCATTGCTTACATC-ATTTAATTA
18242 GGTGAGAGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
29 45 0.83
30 9 0.17
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAATTAAA
Found at i:23426 original size:12 final size:12
Alignment explanation
Indices: 23405--23444 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
23395 TGAATTTGAT
23405 TTTAAACTTTAA
1 TTTAAACTTTAA
*
23417 TTTAACCTTTAA
1 TTTAAACTTTAA
*
23429 ATTAAACTTTAA
1 TTTAAACTTTAA
23441 TTTA
1 TTTA
23445 TATTTTGGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (12 bp):
TTTAAACTTTAA
Found at i:24152 original size:59 final size:59
Alignment explanation
Indices: 24012--24152 Score: 187
Period size: 59 Copynumber: 2.4 Consensus size: 59
24002 AGGGTTAAGT
* * *
24012 TTACAAAATGGTCCCCGACTATAGGGTGATGTTTTGTTGAGTCCCTCGACTATTAAAAG
1 TTACAAAATGGTCCTCGACTATAGGGTGATGCTTTATTGAGTCCCTCGACTATTAAAAG
* *
24071 TTACAAAATGGTCCTTTGACTATAGGGT-ATTGCTTTATTGAGTCCC-CGACTATTGAAAG
1 TTACAAAATGGTCC-TCGACTATAGGGTGA-TGCTTTATTGAGTCCCTCGACTATTAAAAG
*
24130 TTACAAAATGGTCACTCAACTAT
1 TTACAAAATGGTC-CTCGACTAT
24153 TTAGTATGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
59 46 0.64
60 26 0.36
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (59 bp):
TTACAAAATGGTCCTCGACTATAGGGTGATGCTTTATTGAGTCCCTCGACTATTAAAAG
Found at i:24492 original size:60 final size:59
Alignment explanation
Indices: 24363--24492 Score: 156
Period size: 60 Copynumber: 2.2 Consensus size: 59
24353 GGATGACCAT
* *
24363 TTTGTAACTTTTAATAGTCGGGGACTCAACAAAGGGACACCCTATAGTCGAAAGACTAT
1 TTTGTAACTTTTAATAGTCGGGGACTCAACAAAGGCACACCCTATAGTCGAAAGACTAG
* * * **
24422 TTTGTAACTTTTAATAGTCGAGTGACTCAACAAA-GCATCATCTTATAGTCGAGGGACT-G
1 TTTGTAACTTTTAATAGTCG-GGGACTCAACAAAGGCA-CACCCTATAGTCGAAAGACTAG
24481 TTTGTATACTTT
1 TTTGTA-ACTTT
24493 ACCCAAAAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
59 28 0.46
60 33 0.54
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (59 bp):
TTTGTAACTTTTAATAGTCGGGGACTCAACAAAGGCACACCCTATAGTCGAAAGACTAG
Found at i:29382 original size:20 final size:20
Alignment explanation
Indices: 29353--29392 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
29343 ATTTCACCAC
*
29353 ATGCAACTATATGCTCCTAA
1 ATGCAACTATATGATCCTAA
*
29373 ATGCATCTATATGATCCTAA
1 ATGCAACTATATGATCCTAA
29393 TTGGGCTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.33
Consensus pattern (20 bp):
ATGCAACTATATGATCCTAA
Found at i:29616 original size:31 final size:31
Alignment explanation
Indices: 29581--29639 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
29571 ACCATTAAAT
29581 CAAGAAACCTAAACCTTATAATCTTCCAAAC
1 CAAGAAACCTAAACCTTATAATCTTCCAAAC
* * *
29612 CAAGACACCTCAACCTTATCATCTTCCA
1 CAAGAAACCTAAACCTTATAATCTTCCA
29640 TAAGTCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.34, G:0.03, T:0.24
Consensus pattern (31 bp):
CAAGAAACCTAAACCTTATAATCTTCCAAAC
Found at i:37278 original size:16 final size:15
Alignment explanation
Indices: 37245--37278 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
37235 TGAAAGGAAT
*
37245 ATTTTTAAAATTCTA
1 ATTTTTAAAATTATA
37260 ATTTTTAAAATTATCA
1 ATTTTTAAAATTAT-A
37276 ATT
1 ATT
37279 AATTACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTTTAAAATTATA
Found at i:38023 original size:13 final size:13
Alignment explanation
Indices: 38005--38031 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37995 TAAGTGTTAA
38005 TGAATTTTAAGAT
1 TGAATTTTAAGAT
38018 TGAATTTTAAGAT
1 TGAATTTTAAGAT
38031 T
1 T
38032 TTATATTCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (13 bp):
TGAATTTTAAGAT
Found at i:38067 original size:17 final size:18
Alignment explanation
Indices: 38033--38069 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
38023 TTTAAGATTT
38033 TATATTCGATTCAAAATTA
1 TATATTCGATTC-AAATTA
38052 TATATTCGATTC-AATTA
1 TATATTCGATTCAAATTA
38069 T
1 T
38070 TCAAATATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
19 12 0.67
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (18 bp):
TATATTCGATTCAAATTA
Found at i:38439 original size:32 final size:32
Alignment explanation
Indices: 38398--38460 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
38388 GCAAAATGGG
38398 TACCGATACCATGACAGGTATCAATACCTCTA
1 TACCGATACCATGACAGGTATCAATACCTCTA
38430 TACCGATACCATGACAGGTATCAATACCTCT
1 TACCGATACCATGACAGGTATCAATACCTCT
38461 TTGTATAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (32 bp):
TACCGATACCATGACAGGTATCAATACCTCTA
Found at i:44761 original size:20 final size:19
Alignment explanation
Indices: 44719--44761 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
44709 ATAAAAAATG
* *
44719 TTTTTGTTTTAAATTGTTG
1 TTTTTGATTTAAATTGTTA
*
44738 TTTTTGATTTAATTATGTTA
1 TTTTTGATTTAAAT-TGTTA
44758 TTTT
1 TTTT
44762 CATGAAAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (19 bp):
TTTTTGATTTAAATTGTTA
Found at i:46588 original size:14 final size:13
Alignment explanation
Indices: 46560--46586 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46550 GGAGTGGGGG
46560 AGTAATTTTTCAA
1 AGTAATTTTTCAA
46573 AGTAATTTTTCAA
1 AGTAATTTTTCAA
46586 A
1 A
46587 AGACAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (13 bp):
AGTAATTTTTCAA
Done.