genome.fa.s4461.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004461.1 Hibiscus syriacus cultivar Beakdansim tig00009833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113503

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17439--17488	23	2.3	22	89	6	75	62	0	6	32	1.20
17572--17618	18	2.7	18	93	3	78	31	8	31	27	1.87
17999--18507	256	2.0	251	86	8	710	41	19	11	27	1.86
20951--21007	29	1.9	30	82	3	71	47	7	1	43	1.40
24618--24652	18	2.0	17	88	5	52	17	20	34	28	1.95
27105--27143	19	2.1	19	85	9	53	53	10	7	28	1.62
28824--28857	17	2.0	17	88	0	50	47	14	14	23	1.82
33937--33975	18	2.1	19	85	4	53	41	5	2	51	1.38
34936--34979	20	2.2	20	87	0	61	38	29	11	20	1.87
36927--37021	31	3.0	31	90	6	147	37	24	18	18	1.94
37678--37883	64	3.2	63	75	8	184	27	19	20	32	1.97
37738--37901	64	2.6	64	78	5	172	27	21	19	31	1.98
39823--39992	36	4.9	36	68	17	108	38	14	15	31	1.88
39779--40154	102	3.7	102	86	4	457	37	13	17	32	1.88
40054--40194	30	4.5	30	74	13	122	39	12	18	30	1.87
40114--40240	36	3.7	35	72	17	122	38	12	19	29	1.89
40084--40225	66	2.2	66	94	0	248	39	11	19	29	1.87
42354--42483	8	15.9	8	73	17	56	6	14	0	78	0.98
42354--42390	19	1.9	19	88	0	56	5	5	0	89	0.60
44211--44366	31	5.0	31	91	1	242	36	22	20	20	1.95
44582--44628	23	2.0	24	91	4	78	34	21	0	44	1.52
46427--46477	22	2.2	24	80	13	63	60	3	13	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55502--55535	16	2.1	16	88	0	50	50	0	2	47	1.16
56074--56321	130	1.9	130	92	0	415	35	12	15	36	1.85
56718--56793	35	2.2	35	87	0	116	34	1	23	40	1.63
63476--63502	3	9.0	3	100	0	54	33	0	0	66	0.92
63532--63565	3	10.7	3	90	6	50	32	0	2	64	1.08
63476--63596	63	2.0	61	90	3	188	39	3	4	52	1.40
63764--63824	31	2.0	31	93	0	104	27	18	9	44	1.81
65432--65637	104	2.0	103	84	3	270	37	16	18	27	1.93
73742--74074	166	2.0	169	95	3	611	29	20	23	27	1.98
88445--88491	21	2.1	21	84	11	58	46	0	2	51	1.13
90329--90447	36	3.3	37	89	7	181	35	5	16	42	1.70
94840--94901	21	3.2	21	63	25	55	33	4	19	41	1.72
94832--94951	36	3.3	36	92	3	188	33	5	18	43	1.72
100751--100792	19	2.2	19	100	0	84	50	9	4	35	1.56
104335--104501	90	1.9	90	96	0	307	34	11	7	46	1.68
104474--104543	20	3.3	20	76	23	72	50	1	1	47	1.19
104474--104543	22	3.3	21	77	16	72	50	1	1	47	1.19

Tables:   1

The End!