genome.fa.s4462.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004462.1 Hibiscus syriacus cultivar Beakdansim tig00009834_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80294

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4677--4856	74	2.4	73	82	9	206	35	17	18	28	1.94
4677--4904	74	3.2	70	76	11	178	33	17	20	28	1.95
6897--6995	45	2.2	45	89	3	146	22	20	21	36	1.95
6799--7240	121	3.7	121	92	3	687	25	20	19	34	1.96
7018--7115	44	2.2	45	88	1	144	23	21	19	35	1.96
7023--7129	44	2.4	44	87	4	142	24	23	19	32	1.97
7138--7331	45	4.3	45	86	2	228	24	21	20	34	1.97
6799--7240	241	1.8	242	90	3	721	25	20	19	34	1.96
7565--7605	3	13.7	3	85	10	57	34	0	2	63	1.08
7631--7672	22	1.9	22	85	9	59	38	35	9	16	1.81
8905--8944	20	2.0	20	85	0	53	25	7	2	65	1.32
8951--9012	31	1.9	33	84	12	85	38	1	3	56	1.25
9268--9293	2	13.0	2	100	0	52	50	0	0	50	1.00
10583--10707	57	2.2	57	94	0	223	30	4	16	48	1.65
26421--26703	55	5.1	55	85	6	335	32	24	15	28	1.95
26440--26706	110	2.4	110	90	2	428	31	24	16	27	1.96
26618--26795	89	2.0	89	89	4	270	34	22	16	26	1.95
26714--26902	55	3.4	55	89	2	308	33	26	15	23	1.95
26570--26848	144	1.9	144	91	4	456	34	23	15	26	1.95
26508--26902	199	2.0	199	86	7	563	33	24	16	26	1.96
28187--28294	14	6.6	17	74	16	102	10	12	0	76	1.01
28190--28222	7	4.7	7	100	0	66	12	12	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28181--28292	50	2.2	50	85	6	147	8	12	0	78	0.96
28189--28289	12	7.9	13	72	15	52	9	12	0	77	1.00
28197--28289	24	3.8	24	78	16	100	9	12	0	77	0.99
37921--38057	45	3.0	45	95	2	238	37	21	10	30	1.86
44040--44140	3	34.0	3	85	2	141	34	1	0	63	1.06
44040--44149	21	5.3	21	90	3	161	36	1	0	61	1.06
44592--44624	1	33.0	1	100	0	66	100	0	0	0	0.00
44643--44689	24	1.9	24	82	4	58	70	12	17	0	1.17
45565--45611	20	2.3	21	78	10	62	25	2	8	63	1.34
45661--45704	13	3.5	12	78	9	52	34	0	0	65	0.93
57021--57047	14	1.9	14	100	0	54	81	0	18	0	0.69
58237--58692	52	8.8	52	93	2	767	23	15	22	38	1.92
59330--59992	114	5.8	113	91	2	1040	37	13	19	28	1.90
59330--59992	227	2.9	226	91	2	1049	37	13	19	28	1.90
59325--59990	341	1.9	344	94	2	1189	37	13	19	28	1.90
60241--60341	3	34.0	3	85	2	141	34	1	0	63	1.06
60241--60350	21	5.3	21	90	3	161	36	1	0	61	1.06
60793--60826	1	34.0	1	93	0	59	97	0	2	0	0.19
60793--60831	12	3.0	13	92	7	62	92	0	7	0	0.39
60793--60831	14	2.9	14	92	3	62	92	0	7	0	0.39
60845--60891	24	1.9	24	82	4	58	70	12	17	0	1.17
61765--61811	20	2.3	21	78	10	62	25	2	8	63	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61862--61905	13	3.5	12	78	9	52	34	0	0	65	0.93
63661--63730	35	2.0	35	97	0	131	55	2	17	24	1.55
71271--71341	18	3.8	18	78	7	79	32	32	15	19	1.93
78113--78183	18	3.8	18	81	7	97	30	33	18	16	1.93
80030--80096	31	2.2	31	86	5	91	40	11	7	40	1.70

Tables:   1

The End!