genome.fa.s4463.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004463.1 Hibiscus syriacus cultivar Beakdansim tig00009839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146797

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6130--6185	24	2.3	24	79	11	62	37	0	3	58	1.15
10478--10520	2	21.5	2	100	0	86	51	0	0	48	1.00
14976--15025	26	1.9	26	84	8	66	42	0	6	52	1.26
15456--15497	20	2.1	20	86	0	57	30	30	7	30	1.84
15644--15692	20	2.5	20	82	0	62	26	24	14	34	1.94
15784--15844	22	2.8	22	92	2	97	27	37	6	27	1.82
15853--15891	17	2.4	16	86	4	51	25	5	0	69	1.09
16486--16519	12	2.8	12	90	0	50	55	29	0	14	1.40
16645--16698	24	2.2	24	93	0	90	20	18	20	40	1.91
19214--19288	39	1.9	39	94	5	134	30	13	17	38	1.88
19363--19407	20	2.2	20	84	0	54	53	22	8	15	1.69
19431--19476	20	2.3	20	88	0	65	19	15	23	41	1.89
20792--20931	21	6.7	21	81	4	149	26	17	35	20	1.95
20806--20931	63	2.0	63	87	0	180	26	17	36	19	1.94
21075--21120	4	11.5	4	80	0	56	67	4	2	26	1.21
23016--23059	19	2.2	20	92	4	72	45	25	18	11	1.82
23055--23123	20	3.8	20	72	21	60	14	15	21	47	1.81
23071--23104	14	2.4	14	90	0	50	11	17	23	47	1.81
31445--31499	27	2.0	27	82	6	67	54	9	3	32	1.49
44274--44374	31	3.3	31	78	9	84	59	0	0	40	0.97
45094--45145	15	3.5	15	74	10	61	50	1	5	42	1.37
45085--45173	30	3.0	30	90	1	135	46	2	11	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45085--45157	15	4.9	14	70	12	56	46	1	9	42	1.45
45368--45541	90	1.9	88	80	9	199	45	0	4	49	1.22
45511--45561	23	2.2	23	82	0	57	45	1	1	50	1.24
45549--45619	19	3.6	19	70	10	54	46	2	1	49	1.25
45690--45736	22	2.1	23	88	4	69	53	0	0	46	1.00
45693--45744	22	2.3	22	83	6	59	53	0	0	46	1.00
45966--46060	42	2.3	42	94	0	163	49	20	15	14	1.79
58196--58236	18	2.3	18	91	4	66	63	2	4	29	1.28
58279--58308	10	3.0	10	95	0	51	36	0	30	33	1.58
60871--60903	17	1.9	17	100	0	66	66	6	6	21	1.35
60911--60961	14	3.4	14	77	15	57	58	3	0	37	1.16
60910--60962	16	3.5	15	78	14	63	60	3	0	35	1.15
61213--61261	23	2.1	23	84	0	62	28	24	10	36	1.88
61389--61474	32	2.7	32	85	1	120	43	0	11	45	1.40
62335--62379	21	2.1	21	91	0	72	51	11	11	26	1.71
67321--67345	13	1.9	13	100	0	50	40	16	24	20	1.91
68288--68330	23	1.9	23	85	4	61	39	2	2	55	1.25
69183--69208	4	6.5	4	100	0	52	23	0	0	76	0.78
69342--69420	32	2.5	32	79	8	81	69	5	6	18	1.29
69354--69422	31	2.2	30	80	12	86	71	4	7	17	1.26
70294--70356	27	2.3	29	78	15	71	52	11	0	36	1.37
73798--73841	2	22.0	2	90	0	70	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78617--79124	251	2.0	251	99	0	998	34	25	19	19	1.96
84825--84864	3	13.7	3	94	5	73	70	0	30	0	0.88
85692--86359	105	6.4	105	95	0	1178	33	26	17	22	1.96
87930--87997	2	36.0	2	78	11	54	38	1	1	58	1.16
91808--91839	16	2.0	17	88	11	50	56	0	6	37	1.25
92135--92160	2	13.0	2	100	0	52	50	0	0	50	1.00
95708--95756	19	2.5	20	74	12	57	42	8	6	42	1.59
98738--98792	22	2.5	22	78	0	65	30	9	21	38	1.85
104085--104139	22	2.5	22	78	0	65	30	9	21	38	1.85
108393--108485	23	4.0	23	92	4	152	21	21	25	31	1.98
110281--110373	48	1.9	48	93	0	159	19	17	39	23	1.92
113024--113097	3	24.7	3	89	5	114	37	0	0	62	0.96
113098--113169	3	24.3	3	97	2	137	68	0	0	31	0.90
114462--114514	21	2.5	21	81	6	72	20	26	18	33	1.96
114501--114555	20	2.7	21	80	5	67	38	18	23	20	1.93
114545--114617	20	3.7	20	90	0	101	27	27	20	24	1.99
114804--114847	22	2.0	22	90	0	70	22	40	13	22	1.89
115097--115155	20	3.0	20	87	0	73	15	18	22	44	1.87
115292--115346	25	2.2	24	78	15	58	20	9	18	52	1.71
117056--117100	20	2.3	20	80	3	56	40	20	22	17	1.92
117084--117166	19	4.6	19	73	14	95	45	21	19	13	1.84
117194--117230	19	1.9	19	88	0	56	16	18	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117199--117238	19	2.1	19	85	0	53	17	17	15	50	1.79
117245--117283	20	2.0	20	94	0	69	25	12	28	33	1.93
117632--117700	21	3.3	20	74	6	66	24	40	15	18	1.90
117622--117712	41	2.2	42	88	2	139	21	41	15	20	1.89
119299--119363	19	3.7	19	84	15	95	46	18	21	13	1.84
119382--119457	20	3.8	20	96	0	134	14	22	23	39	1.91
119377--119476	40	2.8	34	77	16	110	14	24	24	38	1.92
120396--120440	23	2.0	23	86	0	63	26	28	24	20	1.99
120419--120722	149	2.0	149	98	0	590	36	20	15	26	1.93
121111--121262	67	2.3	67	92	1	250	16	26	27	28	1.97
127028--127072	23	2.0	23	86	0	63	26	28	24	20	1.99
127051--127354	149	2.0	149	98	0	581	36	20	15	27	1.93
127818--127858	21	2.0	21	90	0	64	9	36	31	21	1.86
127819--127970	67	2.3	67	92	1	250	16	26	27	28	1.97
128920--129007	20	4.4	20	89	0	113	26	20	27	26	1.99
128975--129052	41	1.9	41	91	0	129	21	16	23	38	1.93
128915--129049	20	6.7	20	79	5	101	24	18	24	32	1.97
129041--129089	20	2.4	20	86	3	62	22	22	16	38	1.92
128975--129070	41	2.3	41	82	3	113	22	18	21	36	1.95
129079--129130	21	2.5	21	84	3	79	34	19	25	21	1.96
129553--129592	20	2.0	20	85	0	53	25	7	2	65	1.32
138774--139004	75	3.1	74	80	10	219	33	17	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140995--141093	45	2.2	45	89	3	146	22	20	21	36	1.95
140897--141337	121	3.7	121	92	3	678	25	20	19	34	1.96
141116--141214	45	2.2	45	88	0	144	23	21	20	35	1.96
141237--141427	45	4.3	44	83	6	208	25	21	20	32	1.97
141659--141697	16	2.5	15	91	4	60	35	0	2	61	1.10
141659--141697	18	2.1	19	90	4	62	35	0	2	61	1.10
141722--141763	22	1.9	22	85	9	59	38	35	9	16	1.81
142973--143011	19	2.0	20	85	5	53	25	7	2	64	1.33
143018--143079	31	1.9	33	84	12	85	38	1	3	56	1.25
143327--143355	2	15.0	2	92	7	51	51	0	0	48	1.00
143330--143356	13	2.1	13	100	0	54	55	0	0	44	0.99
144626--144747	56	2.2	56	93	0	217	31	4	17	47	1.66

Tables:   1

The End!