genome.fa.s4465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004465.1 Hibiscus syriacus cultivar Beakdansim tig00009841_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78026

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--958	84	11.4	85	85	3	1186	35	22	17	24	1.95
1--958	251	3.8	250	85	6	1163	35	22	17	24	1.95
1--958	334	2.9	331	86	4	1268	35	22	17	24	1.95
2791--2836	22	2.1	21	84	11	58	17	2	2	78	0.96
2900--2986	29	2.8	30	75	15	79	17	3	5	73	1.17
2942--3001	30	2.0	29	84	9	77	20	3	1	75	1.04
3040--3093	14	4.0	14	77	20	53	24	5	1	68	1.21
3050--3093	14	3.2	13	84	15	54	25	2	2	70	1.10
3141--3197	16	3.7	16	69	21	50	31	5	1	61	1.28
3424--3490	35	1.9	35	81	6	82	17	5	1	74	1.09
3509--3554	19	2.3	20	82	14	60	28	2	4	65	1.23
7831--7870	12	3.3	12	89	0	53	47	27	7	17	1.74
12936--12975	21	1.9	21	85	10	55	35	30	5	30	1.79
13453--13492	11	3.7	11	81	18	57	37	10	20	32	1.85
13448--13503	21	2.7	21	100	0	112	39	8	16	35	1.80
13448--13502	10	5.3	10	76	23	60	38	9	16	36	1.80
17115--17232	21	5.7	21	73	4	123	20	19	26	33	1.96
17111--17229	41	2.9	41	97	0	229	20	20	25	34	1.96
17136--17208	20	3.6	20	74	3	83	15	23	24	36	1.93
17200--17273	22	3.4	22	79	5	80	22	16	27	33	1.95
17389--17466	6	14.0	6	94	2	96	20	61	17	0	1.34
17373--17465	12	8.2	12	89	2	90	24	56	17	1	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17378--17465	18	5.2	18	91	4	107	23	57	18	0	1.40
17393--17467	5	13.8	5	94	5	96	20	61	18	0	1.35
17989--18089	20	4.9	20	70	9	69	37	22	21	17	1.94
17967--18266	41	7.0	41	72	12	203	33	21	20	24	1.97
18037--18131	21	4.6	21	77	2	111	32	24	17	25	1.97
18194--18267	20	3.7	20	74	3	76	37	24	21	16	1.93
18242--18297	28	2.0	28	82	6	69	33	16	28	21	1.95
18055--18320	135	2.0	136	90	2	419	31	19	22	27	1.98
19020--19067	19	2.7	18	84	9	62	60	4	0	35	1.16
19605--19656	25	2.1	25	92	0	86	30	34	0	34	1.58
23512--23580	31	2.3	30	85	7	88	44	4	0	50	1.21
24330--24369	21	1.9	21	100	0	80	27	37	25	10	1.88
24331--24520	74	2.5	75	88	4	276	30	26	23	18	1.98
26433--26472	21	1.9	21	90	10	64	55	5	7	32	1.50
30266--30366	23	4.6	23	87	7	131	19	31	23	24	1.98
33073--33131	21	2.8	21	100	0	118	27	37	25	10	1.88
32994--33204	96	2.2	97	92	4	347	31	27	23	17	1.97
35474--35525	22	2.3	23	93	6	97	59	0	3	36	1.16
35480--35518	12	3.4	12	79	13	55	56	0	5	38	1.22
36976--37000	12	2.1	12	100	0	50	0	28	0	72	0.86
37175--37228	24	2.2	24	93	0	90	40	20	18	20	1.91
38181--38289	41	2.7	40	83	8	132	32	11	24	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38181--38312	20	6.6	20	77	10	101	30	12	25	32	1.92
38154--38311	61	2.6	60	77	6	158	32	12	22	31	1.92
38160--38313	40	3.8	40	79	11	147	31	11	24	33	1.91
44169--44274	31	3.3	31	67	17	79	36	16	21	24	1.94
50387--50448	23	2.7	23	89	0	88	14	48	0	37	1.44
55449--55607	45	3.6	44	91	3	230	37	7	24	30	1.83
60196--60276	36	2.3	35	85	8	103	38	34	12	14	1.84
60556--60666	42	2.6	42	92	1	177	25	12	15	46	1.81
63700--63756	28	2.0	28	93	0	96	21	28	10	40	1.86
64595--64658	23	2.9	23	75	15	71	28	0	3	68	1.04
66319--66356	20	1.9	20	88	0	58	52	10	13	23	1.71
69202--69458	138	1.9	138	89	3	401	40	19	13	26	1.88
72130--72173	18	2.4	19	88	7	72	47	4	13	34	1.63
73582--73826	54	4.5	55	83	5	289	25	22	26	25	2.00
73585--73823	111	2.2	109	88	3	345	25	22	26	25	2.00
73942--74099	81	2.0	81	92	0	262	31	22	30	16	1.96

Tables:   1

The End!