genome.fa.s4466.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004466.1 Hibiscus syriacus cultivar Beakdansim tig00009845_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82508

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831--1882	26	2.1	24	92	7	86	30	0	38	30	1.58
7461--7534	23	3.2	23	92	0	121	22	24	40	12	1.88
7994--8033	21	1.9	21	89	0	62	37	5	5	52	1.45
11133--11157	9	2.8	9	100	0	50	44	0	36	20	1.52
11515--11557	18	2.4	18	96	0	77	6	46	20	25	1.76
18365--18406	20	2.1	20	90	0	66	26	4	16	52	1.63
18551--18594	17	2.6	17	85	7	63	36	2	0	61	1.09
21530--21632	41	2.5	40	82	4	134	32	19	21	27	1.97
22036--22192	84	1.9	85	82	6	203	29	16	22	30	1.96
31715--31743	12	2.3	13	94	5	51	31	0	0	68	0.89
35562--37260	249	6.8	248	84	5	1757	29	25	20	24	1.99
35562--37344	414	4.3	413	88	2	2519	29	25	20	24	1.99
35562--37389	579	3.2	578	89	2	2539	29	25	20	24	1.99
35562--37389	165	11.0	164	82	4	1697	29	25	20	24	1.99
39667--39695	12	2.3	13	94	5	51	31	0	0	68	0.89
41446--41541	42	2.3	43	85	1	122	34	20	21	22	1.97
46973--47007	15	2.3	15	85	0	52	57	0	0	42	0.99
47566--47599	10	3.4	10	84	15	52	35	26	0	38	1.57
47566--47608	20	2.2	20	91	0	68	37	25	2	34	1.69
60950--60987	16	2.2	19	86	13	55	57	0	0	42	0.98
61028--61100	29	2.5	30	75	2	76	17	4	35	42	1.69
61228--61305	40	2.0	40	89	0	120	19	35	25	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61286--61396	51	2.2	51	78	3	125	16	35	29	18	1.93
61668--61744	36	2.1	37	87	2	111	38	12	23	24	1.90
61758--61782	7	3.6	7	100	0	50	16	0	0	84	0.63
62246--62282	19	1.9	19	88	0	56	32	27	16	24	1.96
62327--62374	21	2.3	20	86	10	69	27	18	18	35	1.95
62368--62420	20	2.7	20	87	0	79	41	15	20	22	1.89
62430--62536	20	5.3	20	76	6	108	30	27	18	23	1.98
62409--62536	61	2.1	61	86	0	175	31	27	18	22	1.97
63357--63410	24	2.2	24	86	0	72	22	20	16	40	1.91
63606--63637	14	2.4	13	90	10	55	50	25	15	9	1.74
65628--65662	18	1.9	18	88	0	52	54	22	2	20	1.58
65840--66080	20	12.7	20	77	11	222	35	21	21	21	1.96
65845--66063	54	4.0	54	81	7	253	36	21	21	20	1.96
66230--66295	30	2.2	30	94	0	123	54	12	3	30	1.52
67660--67777	21	5.6	21	72	0	92	22	16	36	24	1.94
67660--67778	42	2.8	42	83	2	141	23	15	36	24	1.94
68258--68302	20	2.2	20	96	0	81	51	20	11	17	1.75
68289--68383	20	4.8	20	86	2	111	37	22	18	21	1.94
68439--68522	20	4.5	20	68	17	72	20	22	23	33	1.97
68398--68532	54	2.5	54	92	0	225	22	22	20	35	1.96
68493--68540	20	2.4	20	85	0	60	20	18	25	35	1.95
68909--68956	21	2.3	21	100	0	96	25	41	18	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68900--68956	21	2.6	23	88	11	68	24	42	15	17	1.88
68922--68969	21	2.3	21	85	0	60	29	37	14	18	1.91
70438--70493	20	2.8	20	91	0	85	48	21	17	12	1.80
70441--70506	20	3.3	20	86	0	78	40	22	18	18	1.91
70884--70944	22	2.8	22	75	9	70	24	13	36	26	1.92
71121--71217	20	4.8	20	82	7	124	24	21	26	26	1.99
71121--71247	61	2.1	61	88	2	184	22	21	26	29	1.99
71236--71288	20	2.7	20	90	0	79	24	20	15	39	1.91
71453--71496	21	2.1	21	100	0	88	31	4	20	43	1.72
76430--76486	24	2.4	24	96	0	105	35	7	35	22	1.82

Tables:   1

The End!