Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004468.1 Hibiscus syriacus cultivar Beakdansim tig00009847_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57282

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12478--12555
38
2.1
38
80
4
86
44
0
6
48
1.28
12612--12686
15
5.2
15
72
15
68
42
0
2
54
1.14
12596--12687
42
2.2
42
92
1
150
42
1
5
51
1.32
13061--13188
64
2.0
64
96
0
238
41
12
14
32
1.83
13520--13655
73
1.9
72
85
10
188
27
22
16
33
1.96
13517--13677
73
2.2
72
81
9
186
29
21
16
32
1.95
15924--15968
23
2.0
23
86
0
63
24
26
24
24
2.00
15936--16397
149
3.1
149
97
1
849
34
21
16
27
1.95
16498--16525
14
2.0
14
100
0
56
35
28
7
28
1.84
16942--17015
2
37.0
2
100
0
148
50
0
0
50
1.00
17960--18004
21
2.1
21
87
0
63
17
24
26
31
1.97
21052--21096
23
2.0
23
90
0
72
24
26
26
22
2.00
21064--21524
149
3.1
149
96
1
831
33
21
17
27
1.95
21625--21652
14
2.0
14
100
0
56
35
28
7
28
1.84
23035--23079
21
2.1
21
87
0
63
17
24
26
31
1.97
24575--25706
201
5.7
201
93
1
1924
31
18
14
36
1.91
24575--25706
395
2.8
397
92
2
1878
31
18
14
36
1.91
27765--27830
33
2.0
33
93
0
114
22
46
0
30
1.52
27864--27928
21
3.1
21
90
0
94
18
30
7
43
1.78
31982--32026
3
15.3
3
86
4
65
37
0
2
60
1.09
31982--32038
15
4.1
14
82
10
64
42
0
1
56
1.10
33126--33170
21
2.1
21
87
0
63
31
28
24
15
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33756--33790
18
1.9
18
88
11
54
54
5
17
22
1.64
34773--35225
149
3.0
149
98
0
861
27
17
20
34
1.95
35204--35248
23
2.0
23
86
0
63
20
24
28
26
1.99
38381--38425
21
2.1
21
87
0
63
31
28
24
15
1.96
39006--39040
18
1.9
18
88
11
54
54
5
17
22
1.64
39097--39140
22
2.0
22
86
4
63
45
0
22
31
1.53
40032--40482
149
3.0
149
98
0
859
27
17
19
34
1.95
43579--43623
22
2.0
22
86
4
63
31
31
26
11
1.91
44937--44972
18
2.0
18
100
0
72
11
22
33
33
1.89
44908--45095
62
3.1
62
62
26
146
25
15
24
35
1.94
44834--45197
121
3.0
121
97
0
685
24
15
24
35
1.94
45058--45093
18
2.0
18
94
0
63
13
22
30
33
1.93
45204--45264
23
2.7
23
89
0
95
19
26
27
26
1.99
49002--49044
21
2.0
21
86
0
59
27
23
27
20
1.99
49071--49115
22
2.0
22
86
4
63
31
33
26
8
1.87
50429--50464
18
2.0
18
94
0
63
13
22
30
33
1.93
50326--50689
121
3.0
121
94
0
622
26
14
23
35
1.94
50546--50582
18
2.1
17
95
5
65
18
16
29
35
1.93
55393--55436
20
2.2
20
87
0
61
15
9
6
68
1.38

Tables:   1

The End!