Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004469.1 Hibiscus syriacus cultivar Beakdansim tig00009851_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63225

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20050--20148
33
3.1
33
88
5
141
38
22
14
25
1.91
24748--24846
33
3.1
33
91
2
157
38
23
14
24
1.91
26856--26930
7
10.4
7
69
11
53
64
0
0
36
0.94
26828--26944
35
3.5
35
90
8
190
60
0
0
38
1.03
32031--32354
140
2.3
140
89
2
486
29
22
18
29
1.97
32423--32471
20
2.5
20
96
0
89
32
20
24
22
1.98
32473--33827
225
6.2
215
84
4
1666
31
19
16
33
1.94
33714--33827
44
2.7
40
76
14
104
30
19
22
27
1.98
35104--35359
125
2.0
125
87
0
368
27
27
14
29
1.95
38696--38733
13
3.0
13
88
3
60
50
15
15
18
1.79
38696--38733
6
6.2
6
85
14
51
50
15
15
18
1.79
38914--39280
177
2.1
178
85
5
485
22
20
15
41
1.90
50167--50203
20
1.9
19
89
10
58
45
10
24
18
1.81
52175--52218
12
3.8
11
82
8
52
81
0
4
13
0.83
52274--52311
5
7.8
5
83
16
53
63
0
2
34
1.09
52259--52306
18
2.5
19
83
12
62
62
4
2
31
1.26
52568--52616
23
2.1
24
81
11
57
57
0
8
34
1.29
53078--53182
37
2.8
36
84
5
138
30
15
15
39
1.88
53910--55598
106
16.0
107
89
3
2422
23
17
24
34
1.96
56375--56443
22
3.2
22
91
4
122
23
14
26
36
1.93
60708--60744
19
1.9
19
89
10
58
67
0
24
8
1.17
61832--61886
12
4.6
12
82
8
58
76
0
5
18
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61858--61886
4
7.2
4
100
0
58
75
0
0
24
0.80
61949--62033
29
2.8
30
71
21
77
65
7
3
23
1.33
62227--62275
23
2.1
24
81
11
57
57
0
8
34
1.29
62737--62840
36
2.8
36
80
8
120
30
14
14
40
1.86

Tables:   1

The End!