genome.fa.s447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000447.1 Hibiscus syriacus cultivar Beakdansim tig00000817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62438

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5929--5954	4	6.5	4	100	0	52	76	0	0	23	0.78
6650--6681	13	2.4	14	94	5	57	56	0	0	43	0.99
7954--7999	3	15.7	3	78	13	51	63	0	0	36	0.95
7954--7999	14	3.4	14	90	3	67	63	0	0	36	0.95
9597--9640	23	2.0	22	95	4	79	20	9	13	56	1.64
10144--10190	18	2.8	17	82	17	62	38	0	4	57	1.18
10200--10232	17	1.9	17	100	0	66	21	6	6	66	1.35
13907--13955	20	2.4	20	79	3	53	53	4	0	42	1.20
14831--14888	27	2.1	27	81	6	64	37	8	5	48	1.56
23369--23425	20	2.8	20	83	0	78	26	26	14	33	1.94
26958--27013	19	2.8	20	84	10	62	5	16	5	73	1.21
26963--27026	20	3.3	19	79	14	53	4	12	6	76	1.13
27533--27605	26	2.9	25	93	4	128	30	16	17	35	1.92
27533--27608	25	3.0	25	94	3	134	30	15	18	35	1.92
27676--27734	3	19.3	3	92	3	100	69	0	0	30	0.89
27976--28216	40	5.8	40	77	11	216	26	19	31	23	1.98
27976--28304	169	1.9	169	93	1	570	25	19	30	24	1.98
28363--28416	28	1.9	28	85	7	74	50	16	12	20	1.78
28432--28614	66	2.8	65	79	10	210	38	16	20	25	1.93
28655--28811	66	2.5	63	77	6	165	40	14	14	31	1.85
28817--28860	15	2.9	15	93	0	70	43	4	20	31	1.72
29316--29580	67	4.0	64	83	10	275	43	13	12	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29368--29580	67	3.2	67	93	2	358	42	13	11	32	1.80
29552--29608	27	2.1	27	90	6	89	43	17	7	31	1.76
29595--29698	52	2.0	53	94	3	183	36	17	13	32	1.89
29694--29836	29	5.1	27	87	5	126	45	13	10	30	1.78
29709--29867	56	2.8	56	82	8	196	44	15	10	30	1.80
29709--29867	29	5.6	28	85	8	187	44	15	10	30	1.80
29803--29879	31	2.5	31	93	0	127	41	12	10	35	1.78
30112--30215	36	3.0	36	81	4	124	35	11	20	32	1.88
30183--30414	105	2.3	100	82	6	259	37	12	19	31	1.89
30440--30501	21	3.1	21	62	17	51	35	12	20	30	1.91
30442--30528	38	2.3	38	86	3	115	37	13	18	29	1.89
30878--30981	28	3.7	28	98	0	199	26	0	25	47	1.53
30890--30968	4	21.8	4	73	19	75	29	0	24	46	1.53
32827--32897	20	3.0	24	73	22	87	40	11	22	25	1.87
32826--32903	26	3.2	25	71	22	85	42	10	21	25	1.84
32812--32905	46	2.1	45	89	2	143	38	9	24	27	1.86
34743--35158	210	2.0	210	85	0	564	24	22	21	31	1.98
35337--35430	31	3.0	31	96	3	170	61	9	13	14	1.56
38486--38550	23	2.8	24	79	15	82	4	13	6	75	1.15
38489--38558	20	3.6	19	77	19	56	4	12	5	77	1.10
39067--39139	26	2.9	25	93	4	128	30	16	17	35	1.92
39067--39142	25	3.0	25	94	3	134	30	15	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39210--39258	3	16.3	3	100	0	98	67	0	0	32	0.91
51778--51864	20	4.2	20	73	11	77	28	14	12	43	1.83
52447--52507	31	1.9	31	83	12	79	29	13	0	57	1.36
52755--52784	12	2.5	12	100	0	60	36	46	0	16	1.47
57312--57367	2	28.0	2	100	0	112	50	0	0	50	1.00
58511--58564	3	17.7	3	83	11	65	66	1	0	31	1.02

Tables:   1

The End!