genome.fa.s4470.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004470.1 Hibiscus syriacus cultivar Beakdansim tig00009857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61198

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1294--1348	21	2.5	22	77	16	60	36	18	16	29	1.92
3559--3620	30	2.1	30	93	0	106	29	25	20	24	1.99
4151--4217	33	2.0	33	97	0	125	31	25	17	25	1.97
8742--8784	18	2.4	18	84	7	61	0	32	4	62	1.15
10671--10715	23	2.0	23	86	0	63	20	17	28	33	1.95
15644--15689	18	2.6	18	100	0	92	28	26	15	30	1.96
17121--17170	26	2.0	26	88	7	77	38	10	18	34	1.84
22370--22439	12	5.8	12	80	6	79	51	18	15	14	1.77
22368--22476	48	2.3	47	85	3	137	47	17	16	18	1.83
22368--22476	24	4.5	25	78	6	109	47	17	16	18	1.83
24011--24110	31	3.2	31	63	31	77	27	27	10	36	1.88
24016--24138	63	2.0	63	100	0	246	27	28	9	34	1.89
25058--25089	7	4.4	7	92	7	55	25	28	34	12	1.92
25059--25149	8	12.5	8	69	26	69	17	24	42	15	1.88
25066--25154	13	6.3	13	83	14	106	15	23	44	15	1.85
25087--25158	31	2.3	31	100	0	144	11	22	50	16	1.77
25100--25141	18	2.3	18	100	0	84	9	23	50	16	1.75
27229--27298	12	5.8	12	80	6	79	51	18	15	14	1.77
27227--27335	48	2.3	47	85	3	137	47	17	16	18	1.83
27227--27335	24	4.5	25	78	6	109	47	17	16	18	1.83
28869--28968	31	3.2	31	63	31	77	27	27	10	36	1.88
28874--28996	63	2.0	63	100	0	246	27	28	9	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29915--29946	7	4.4	7	92	7	55	25	28	34	12	1.92
29916--29975	8	8.5	8	75	25	64	20	25	40	15	1.90
29923--29980	13	4.3	13	93	4	89	17	24	43	15	1.87
32044--32113	12	5.8	12	80	6	79	51	18	15	14	1.77
32042--32150	48	2.3	47	85	3	137	47	17	16	18	1.83
32042--32150	24	4.5	25	78	6	109	47	17	16	18	1.83
33685--33784	31	3.2	31	63	31	77	27	27	10	36	1.88
33690--33812	63	2.0	63	100	0	246	27	28	9	34	1.89
34730--34761	7	4.4	7	92	7	55	25	28	34	12	1.92
34731--34821	8	12.5	8	69	26	69	17	24	42	15	1.88
34738--34826	13	6.3	13	83	14	106	15	23	44	15	1.85
34759--34830	31	2.3	31	100	0	144	11	22	50	16	1.77
34772--34813	18	2.3	18	100	0	84	9	23	50	16	1.75
36894--36963	12	5.8	12	80	6	79	51	18	15	14	1.77
36892--37000	48	2.3	47	85	3	137	47	17	16	18	1.83
36892--37000	24	4.5	25	78	6	109	47	17	16	18	1.83
38534--38633	31	3.2	31	63	31	77	27	27	10	36	1.88
38539--38661	63	2.0	63	100	0	246	27	28	9	34	1.89
39587--39670	8	11.5	8	68	27	62	16	23	44	15	1.86
39587--39675	13	6.3	13	83	14	106	15	23	44	15	1.85
39608--39679	31	2.3	31	100	0	144	11	22	50	16	1.77
39621--39662	18	2.3	18	100	0	84	9	23	50	16	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46504--46617	41	2.8	41	86	0	129	26	20	16	36	1.93
46550--46617	20	3.3	20	79	4	82	26	19	14	39	1.90
48934--49010	18	4.3	18	94	0	127	28	36	16	18	1.93
48934--49019	36	2.3	36	88	4	127	29	36	16	18	1.93
51770--51893	31	4.0	31	77	10	126	32	19	16	31	1.94
51883--51954	30	2.4	30	90	0	108	25	20	23	30	1.99
55412--55462	19	2.7	19	100	0	102	29	21	25	23	1.99
56642--56766	31	4.0	31	80	9	146	29	19	20	31	1.97
57836--57913	23	3.3	23	81	1	93	34	23	17	24	1.96
57920--58137	103	2.1	103	97	0	409	36	24	13	26	1.92
58913--59055	64	2.2	63	78	8	146	27	16	20	35	1.94

Tables:   1

The End!