genome.fa.s4472.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004472.1 Hibiscus syriacus cultivar Beakdansim tig00009860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60563

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1445--1484	13	3.2	12	86	10	53	85	0	15	0	0.61
2626--3186	83	6.7	83	94	1	942	27	12	21	38	1.89
4054--4542	113	4.3	113	91	1	737	37	14	18	29	1.91
4446--4620	92	1.9	92	83	2	226	34	16	16	33	1.91
4438--4636	92	2.2	92	78	5	206	36	14	17	32	1.90
4898--4979	3	26.7	3	80	4	92	39	0	0	60	0.96
6534--6563	13	2.3	13	94	0	51	3	23	60	13	1.48
6927--7000	30	2.3	33	78	21	86	35	4	4	56	1.37
7933--7999	2	33.5	2	100	0	134	50	0	0	49	1.00
14718--14749	15	2.2	14	94	5	55	53	18	12	15	1.73
15913--15962	20	2.5	20	83	0	73	38	22	16	24	1.93
16496--16545	20	2.5	20	86	0	64	54	16	12	18	1.72
16548--16609	20	3.2	20	88	2	90	11	19	22	46	1.81
16550--16620	20	3.5	20	82	0	70	14	16	19	49	1.80
18736--18874	21	6.6	21	82	0	161	24	37	15	23	1.93
20385--20422	20	1.9	20	88	0	58	21	15	26	36	1.93
22985--23038	24	2.2	24	93	0	90	40	20	18	20	1.91
23971--24160	20	9.4	20	71	14	81	34	11	23	31	1.90
23972--24180	40	5.2	40	71	6	154	33	11	23	30	1.91
23983--24201	60	3.6	60	74	6	183	33	12	24	29	1.92
24102--24203	21	5.0	21	74	11	77	31	13	25	29	1.94
24156--24221	20	3.2	20	76	18	64	28	13	30	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27097--27185	44	2.0	44	91	0	142	13	17	20	48	1.81
30993--31119	40	3.2	40	85	1	155	21	28	19	30	1.98
31965--32006	17	2.4	18	88	4	59	40	0	4	54	1.21
32289--32332	20	2.2	20	83	4	52	43	0	2	54	1.12
33265--34126	5	174.6	5	88	9	1251	58	1	0	40	1.07
34124--34189	18	3.6	18	81	4	60	34	3	0	62	1.11
34135--34186	18	2.8	19	85	8	63	32	3	0	63	1.12
36293--36354	2	31.0	2	100	0	124	50	0	0	50	1.00
39066--39102	19	1.9	19	94	0	65	8	8	59	24	1.53
40410--40437	2	14.0	2	100	0	56	50	0	0	50	1.00
40828--40867	19	2.1	19	100	0	80	22	5	37	35	1.76
47472--47510	20	2.0	20	89	0	60	33	10	23	33	1.88
57994--58019	11	2.4	11	100	0	52	0	11	19	69	1.18

Tables:   1

The End!