Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004474.1 Hibiscus syriacus cultivar Beakdansim tig00009863_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80840

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9773--9828
27
2.1
27
100
0
112
10
41
21
26
1.86
9792--9884
36
2.6
36
91
0
150
8
40
23
26
1.83
9872--9952
27
3.0
27
87
0
72
17
32
23
27
1.97
9890--9966
27
2.9
27
94
0
127
19
27
22
31
1.98
18282--18501
30
7.3
30
83
1
201
15
30
25
29
1.96
18282--18501
90
2.4
90
81
5
241
15
30
25
29
1.96
23538--23589
21
2.5
22
84
6
63
42
0
0
57
0.98
23535--23597
29
2.3
26
78
13
72
39
3
0
57
1.15
29305--29444
21
6.7
21
86
4
185
30
25
20
23
1.98
29325--29441
62
1.9
62
94
0
207
32
23
20
23
1.98
30158--30194
6
6.2
6
100
0
74
0
16
48
35
1.46
33593--33630
20
1.9
20
100
0
76
10
31
34
23
1.89
33977--34005
15
2.0
15
93
6
51
58
13
13
13
1.63
34281--34330
15
3.3
15
94
0
91
14
22
36
28
1.92
40014--40042
15
2.0
15
93
6
51
58
13
13
13
1.63
40318--40352
15
2.3
15
95
0
61
14
20
37
28
1.91
43866--43905
18
2.2
18
90
0
62
50
0
10
40
1.36
44289--44350
20
2.9
21
83
7
72
16
25
33
24
1.95
48155--48194
21
1.9
21
85
10
55
35
10
2
52
1.48
50030--50084
21
2.6
21
100
0
110
18
23
27
30
1.97
50927--51010
34
2.5
34
96
1
152
40
0
0
59
0.97
52439--52481
17
2.8
15
83
16
61
4
13
27
53
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53207--53298
41
2.2
42
75
12
100
56
1
1
41
1.13
53209--53601
186
2.1
187
92
1
648
43
2
7
46
1.47
57018--57278
79
3.3
80
84
5
341
34
24
17
22
1.96
60690--60722
6
5.8
6
86
13
52
0
12
0
87
0.53
60689--60725
16
2.2
16
95
4
65
0
10
0
89
0.49
65708--65748
17
2.4
17
100
0
82
14
12
41
31
1.83
71367--71917
276
2.0
274
84
4
716
27
21
20
30
1.98
73981--74057
39
2.0
39
94
0
136
16
12
18
51
1.75
76280--76333
25
2.2
25
96
3
101
25
11
22
40
1.87
77004--77047
20
2.1
20
83
8
52
31
13
6
47
1.69
79595--79649
21
2.6
21
97
0
101
41
18
20
20
1.90
79594--79693
21
4.8
21
78
9
96
38
21
19
22
1.94
79681--79729
20
2.5
20
93
0
80
42
24
16
16
1.87

Tables:   1

The End!