genome.fa.s4475.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004475.1 Hibiscus syriacus cultivar Beakdansim tig00009864_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117769

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3912--3955	17	2.5	17	81	3	52	72	9	4	13	1.24
4143--4216	12	6.2	12	76	9	71	71	1	6	20	1.16
4123--4212	35	2.5	35	75	8	83	71	2	7	18	1.21
6114--6362	107	2.3	106	83	7	301	24	19	23	32	1.97
6334--6494	69	2.4	65	79	9	173	23	22	24	28	1.99
19233--19295	22	2.8	24	76	13	71	52	1	1	44	1.20
19229--19297	17	3.9	18	77	7	79	53	1	1	43	1.18
19695--19821	63	2.0	63	95	0	227	44	7	16	31	1.76
21328--21383	23	2.4	23	96	0	103	25	26	8	39	1.85
22638--22699	14	4.5	13	80	11	61	82	3	12	1	0.87
24566--24711	72	2.0	73	84	5	188	29	21	13	36	1.91
24591--25094	36	14.1	36	74	14	357	28	18	12	40	1.87
24837--24901	21	3.4	20	65	30	52	27	21	7	43	1.80
24740--24890	78	1.9	79	87	1	223	27	18	10	43	1.83
24591--25094	216	2.4	212	85	6	691	28	18	12	40	1.87
24936--25092	73	2.2	73	87	3	219	24	18	15	41	1.89
24985--25126	73	1.9	73	80	5	162	29	17	14	38	1.89
25133--25317	84	2.2	84	87	0	253	31	25	19	23	1.98
30406--30480	35	2.1	35	83	9	91	33	0	22	44	1.53
31650--31726	30	2.4	33	83	10	90	50	1	2	45	1.23
32512--32537	2	13.0	2	100	0	52	0	50	0	50	1.00
33633--34001	20	18.5	20	85	4	458	34	26	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34673--34719	24	2.0	24	87	8	69	25	14	21	38	1.92
34894--34918	12	2.1	12	100	0	50	72	0	28	0	0.86
37219--37543	19	18.4	19	80	16	396	47	17	20	14	1.83
37219--37524	33	8.8	33	78	14	266	47	17	20	14	1.83
37250--37565	161	2.0	157	93	3	544	46	17	21	14	1.83
37250--37565	52	6.0	52	93	4	542	46	17	21	14	1.83
37572--37673	19	5.6	19	85	12	151	14	23	17	44	1.86
37780--37816	14	2.6	14	91	0	65	45	21	0	32	1.52
37811--37883	12	6.0	12	67	20	53	57	16	1	24	1.47
37797--37869	38	1.9	38	97	0	137	53	16	1	28	1.51
39736--39791	14	3.7	14	80	17	67	44	23	21	10	1.83
39717--39808	32	2.8	33	91	3	159	46	21	20	10	1.81
39680--39813	19	7.6	19	78	15	119	45	23	19	11	1.82
39809--39937	19	7.3	19	75	17	125	8	17	28	45	1.77
39809--39900	33	2.8	33	93	3	150	7	18	28	45	1.76
39981--40359	93	4.1	93	98	1	744	46	18	12	21	1.83
39981--40359	184	2.0	186	98	1	744	46	18	12	21	1.83
42051--42164	33	3.5	33	91	1	185	44	21	23	10	1.83
42058--42169	14	6.8	18	71	23	77	42	22	24	10	1.85
42181--42234	14	3.6	14	77	18	63	9	25	24	40	1.85
42176--42222	18	2.9	17	75	18	55	8	23	23	44	1.80
42354--42424	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42606--42660	22	2.5	22	81	0	74	20	16	40	23	1.91
42807--43000	20	9.6	20	82	5	221	19	19	25	35	1.95
42807--43000	60	3.2	60	83	0	253	19	19	25	35	1.95
42993--43069	21	3.7	20	70	13	57	27	16	23	32	1.96
43055--43106	20	2.6	20	96	0	95	21	13	26	38	1.90
50139--50174	2	19.0	2	88	11	58	50	0	0	50	1.00
50581--50640	3	20.0	3	80	13	70	35	0	1	63	1.05
52173--52402	128	1.8	127	80	4	275	40	8	8	42	1.66
52800--52866	31	2.2	31	83	2	82	34	14	29	20	1.93
53182--53321	36	3.9	36	93	0	226	27	17	14	40	1.88
55497--55576	23	3.6	22	77	5	90	23	23	26	26	2.00
55497--55576	21	3.7	20	78	8	70	23	23	26	26	2.00
66830--66881	19	2.7	19	96	0	95	26	21	30	21	1.98
66869--67031	65	2.5	64	80	9	172	28	17	22	31	1.96
66869--67070	65	3.1	63	77	12	171	26	16	23	32	1.96
67871--67899	14	2.0	15	93	6	51	6	3	27	62	1.37
68559--68748	65	2.9	64	79	12	210	32	23	17	26	1.97
69680--69730	20	2.5	20	93	0	84	27	19	27	25	1.99
73991--74041	20	2.5	20	100	0	102	29	17	27	25	1.98
75951--76012	31	2.0	31	87	6	90	37	4	19	38	1.73
81231--81312	29	2.8	29	90	1	119	34	13	10	41	1.79
82590--82619	15	2.0	15	93	0	51	56	30	0	13	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85987--86068	29	2.8	29	90	1	119	34	14	9	41	1.79
87289--87338	22	2.3	21	86	10	66	50	4	0	46	1.20
89355--89422	35	1.9	35	93	0	118	35	20	25	19	1.96
91138--91197	25	2.5	24	86	8	77	38	1	1	58	1.18
97926--98044	32	3.7	32	77	3	132	37	25	11	25	1.90
98182--98213	15	2.1	15	94	0	55	46	37	9	6	1.61
100959--101010	19	2.7	19	93	0	86	25	28	15	30	1.96
108517--108588	21	3.4	21	96	0	126	16	31	12	38	1.86
111243--111280	19	1.9	19	85	15	51	21	0	36	42	1.53
115788--115842	21	2.5	22	77	16	60	36	18	16	29	1.92

Tables:   1

The End!