Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004476.1 Hibiscus syriacus cultivar Beakdansim tig00009865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75530
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Found at i:19774 original size:40 final size:41
Alignment explanation
Indices: 19702--19781 Score: 101
Period size: 41 Copynumber: 2.0 Consensus size: 41
19692 GATTCTACGT
* *
19702 GGTCCTTTGGGACATATATGTATCATTTGGAATATTTATAG
1 GGTCCTTTGAGACATATATGTATCATTTGGAATATGTATAG
* *
19743 GGTCTTTTGAGACATATTTG-ATCCA-TTGGAATATGTATA
1 GGTCCTTTGAGACATATATGTAT-CATTTGGAATATGTATA
19782 TGGTTCTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 15 0.44
41 19 0.56
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (41 bp):
GGTCCTTTGAGACATATATGTATCATTTGGAATATGTATAG
Found at i:20477 original size:22 final size:22
Alignment explanation
Indices: 20428--20480 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
20418 AAATTTTTTA
20428 ACTGTTCATTACTGTTCACGAC
1 ACTGTTCATTACTGTTCACGAC
* * *
20450 ATTGTTCATTGA-TGTTCATGGC
1 ACTGTTCATT-ACTGTTCACGAC
20472 ACTGTTCAT
1 ACTGTTCAT
20481 ACAATATAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (22 bp):
ACTGTTCATTACTGTTCACGAC
Found at i:20898 original size:15 final size:15
Alignment explanation
Indices: 20878--20913 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
20868 TTCTCCTGTG
20878 GTTCGACTAACAACA
1 GTTCGACTAACAACA
20893 GTTCGACTAACAACA
1 GTTCGACTAACAACA
20908 GTTCGA
1 GTTCGA
20914 GTAGTCTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (15 bp):
GTTCGACTAACAACA
Found at i:31203 original size:44 final size:41
Alignment explanation
Indices: 31126--31207 Score: 119
Period size: 44 Copynumber: 1.9 Consensus size: 41
31116 GCAACGCGAT
* *
31126 TTTGAAAAATGTGTTGCGATAGTTAAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
31167 TTTGAAAAACGTGTTGTTGCGATAGTGAAAAAGTGTTGCGA
1 TTTGAAAAA--TG-TGTTGCGATAGTGAAAAAGTGTTGCGA
31208 TAGTGAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 9 0.25
43 2 0.06
44 25 0.69
ACGTcount: A:0.32, C:0.06, G:0.29, T:0.33
Consensus pattern (41 bp):
TTTGAAAAATGTGTTGCGATAGTGAAAAAGTGTTGCGAGAG
Found at i:31217 original size:19 final size:20
Alignment explanation
Indices: 31128--31218 Score: 105
Period size: 19 Copynumber: 4.4 Consensus size: 20
31118 AACGCGATTT
31128 TGAAAAATGTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
* *
31148 T-TAAAATGTGTTGCGAGAG
1 TGAAAAATGTGTTGCGATAG
31167 TTTGAAAAACGTGTTGTTGCGATAG
1 --TGAAAAA--TG-TGTTGCGATAG
31192 TGAAAAA-GTGTTGCGATAG
1 TGAAAAATGTGTTGCGATAG
31211 TGAAAAAT
1 TGAAAAAT
31219 CCAAAATAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
19 34 0.57
20 2 0.03
21 1 0.02
22 4 0.07
23 7 0.12
24 2 0.03
25 10 0.17
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (20 bp):
TGAAAAATGTGTTGCGATAG
Found at i:31687 original size:41 final size:41
Alignment explanation
Indices: 31642--31861 Score: 237
Period size: 41 Copynumber: 5.3 Consensus size: 41
31632 ATTATGTATT
* *
31642 ATCGCGTTGCGATTTTGTATTATCGCGATGCGATAGTTAGA
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGA
* ** * ** *
31683 ATCGCGTTGC-AATTTACA-TATTCGCATTGCGATTTTCTAAA
1 ATCGCGTTGCGATTTTGTATTA-TCGCGTTGCGATAGTC-AGA
*** *
31724 ATCGCAACAACGCGATTATGTATTATCGCGTTGCGATAGTCAGA
1 ATCG---CGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGA
* *
31768 ATCGCATTGCGATTTTGTATTATCGAGTTGCGATAGTCAGA
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGA
*
31809 ATCGCGTTGCGATTTTGTATTATCGAGTTGCGATAGTCAGA
1 ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGA
31850 ATCGCGTTGCGA
1 ATCGCGTTGCGA
31862 ATCTGGAAAC
Statistics
Matches: 147, Mismatches: 25, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.01
40 16 0.11
41 101 0.69
44 9 0.06
45 17 0.12
46 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
ATCGCGTTGCGATTTTGTATTATCGCGTTGCGATAGTCAGA
Found at i:31777 original size:20 final size:20
Alignment explanation
Indices: 31748--31861 Score: 65
Period size: 20 Copynumber: 5.6 Consensus size: 20
31738 ATTATGTATT
*
31748 ATCGCGTTGCGATAGTCAGA
1 ATCGCATTGCGATAGTCAGA
* **
31768 ATCGCATTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGA
31789 ATCG-AGTTGCGATAGTCAGA
1 ATCGCA-TTGCGATAGTCAGA
* * **
31809 ATCGCGTTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGA
31830 ATCG-AGTTGCGATAGTCAGA
1 ATCGCA-TTGCGATAGTCAGA
*
31850 ATCGCGTTGCGA
1 ATCGCATTGCGA
31862 ATCTGGAAAC
Statistics
Matches: 68, Mismatches: 16, Indels: 20
0.65 0.15 0.19
Matches are distributed among these distances:
19 6 0.09
20 34 0.50
21 22 0.32
22 6 0.09
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGA
Found at i:31812 original size:85 final size:83
Alignment explanation
Indices: 31650--31863 Score: 229
Period size: 85 Copynumber: 2.6 Consensus size: 83
31640 TTATCGCGTT
* *
31650 GCGATTTTGTATTATCGCGATGCGATAGTTAGAATCGCGTTGC-AATTTACATATTCGCATTGCG
1 GCGATTTTGTATTATCGCGTTGCGATAGTCAGAATCGCGTTGCGAATTTACATATTCGCATTGCG
**
31714 ATTTTCTAAAATCGCAACAAC
66 ATAGTCTAAAATCG---CAAC
* * * **
31735 GCGATTATGTATTATCGCGTTGCGATAGTCAGAATCGCATTGCGATTTTGTAT-TATCG-AGTTG
1 GCGATTTTGTATTATCGCGTTGCGATAGTCAGAATCGCGTTGCGAATTTACATAT-TCGCA-TTG
* ***
31798 CGATAGTC-AGAATCGCGTT
64 CGATAGTCTAAAATCGCAAC
*
31817 GCGATTTTGTATTATCGAGTTGCGATAGTCAGAATCGCGTTGCGAAT
1 GCGATTTTGTATTATCGCGTTGCGATAGTCAGAATCGCGTTGCGAAT
31864 CTGGAAACTG
Statistics
Matches: 109, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
82 44 0.40
85 47 0.43
86 18 0.17
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (83 bp):
GCGATTTTGTATTATCGCGTTGCGATAGTCAGAATCGCGTTGCGAATTTACATATTCGCATTGCG
ATAGTCTAAAATCGCAAC
Found at i:31860 original size:147 final size:146
Alignment explanation
Indices: 31588--31861 Score: 327
Period size: 147 Copynumber: 1.9 Consensus size: 146
31578 AAATCACATT
* * *
31588 GCGATTTTGTATTATCGCATTGCGATAGTCAGAATCGCGTTGCGATTATGTATTATCGCGTTGCG
1 GCGATTATGTATTATCGCATTGCGATAGTCAGAATCGCATTGCGATTATGTATTATCGAGTTGCG
* ** * * * *
31653 ATTTTGTATTATCGCGATGCGATAGTTAGAATCGCGTTGCAATTTACATATTCGCATTGCGATTT
66 A-TTAGTAGAATCGCGATGCGATAGTTAGAATCGAGTTGCAATGTACAGAATCGCATTGCGATTT
31718 TCTAAAATCGCAACAAC
130 TCTAAAATCGCAACAAC
* *
31735 GCGATTATGTATTATCGCGTTGCGATAGTCAGAATCGCATTGCGATTTTGTATTATCGAGTTGCG
1 GCGATTATGTATTATCGCATTGCGATAGTCAGAATCGCATTGCGATTATGTATTATCGAGTTGCG
* ** ** * *
31800 A-TAGTCAGAATCGCGTTGCGATTTTGTATTATCGAGTTGCGATAGT-CAGAATCGCGTTGCGA
66 ATTAGT-AGAATCGCGATGCGATAGT-TAGAATCGAGTTGCAAT-GTACAGAATCGCATTGCGA
31862 ATCTGGAAAC
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
145 3 0.03
146 14 0.13
147 87 0.83
148 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (146 bp):
GCGATTATGTATTATCGCATTGCGATAGTCAGAATCGCATTGCGATTATGTATTATCGAGTTGCG
ATTAGTAGAATCGCGATGCGATAGTTAGAATCGAGTTGCAATGTACAGAATCGCATTGCGATTTT
CTAAAATCGCAACAAC
Found at i:31984 original size:41 final size:41
Alignment explanation
Indices: 31748--31985 Score: 153
Period size: 41 Copynumber: 5.8 Consensus size: 41
31738 ATTATGTATT
* * * * * *
31748 ATCGCGTTGCGATAGTCAGAATCGCATTGCGATTTTGTATT
1 ATCGAGTTGCGATAGTCAAAATCGCGTTGCGAATTTGGATA
* * * *
31789 ATCGAGTTGCGATAGTCAGAATCGCGTTGCGATTTTGTATT
1 ATCGAGTTGCGATAGTCAAAATCGCGTTGCGAATTTGGATA
* *
31830 ATCGAGTTGCGATAGTCAGAATCGCGTTGCGAATCTGGA-A
1 ATCGAGTTGCGATAGTCAAAATCGCGTTGCGAATTTGGATA
* * ** * **
31870 A-CTGATTTGCGATAATGGAGATCGCGTTGCG-ATTTACATA
1 ATC-GAGTTGCGATAGTCAAAATCGCGTTGCGAATTTGGATA
* * ** *** *
31910 TTCGCA-TTGTGATTTTCTAAAATCGCAACGCGAATTTGGAAA
1 ATCG-AGTTGCGATAGTC-AAAATCGCGTTGCGAATTTGGATA
*
31952 ATCGCA-ATGCGATAGTCAAAATCGCGTTGCGAAT
1 ATCG-AGTTGCGATAGTCAAAATCGCGTTGCGAAT
31986 CTGTAAACTG
Statistics
Matches: 155, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
39 5 0.03
40 32 0.21
41 100 0.65
42 18 0.12
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.32
Consensus pattern (41 bp):
ATCGAGTTGCGATAGTCAAAATCGCGTTGCGAATTTGGATA
Found at i:33169 original size:23 final size:23
Alignment explanation
Indices: 33143--33190 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
33133 ATAAAGTACA
*
33143 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
** *
33166 ATAATGTAATATGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
33189 AT
1 AT
33191 TTACCTATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:33595 original size:21 final size:22
Alignment explanation
Indices: 33570--33621 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
33560 ACACTTTACA
*
33570 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
33593 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
33616 ATATAA
1 ATATAA
33622 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:33606 original size:23 final size:23
Alignment explanation
Indices: 33580--33642 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
33570 ATATAACCAC
33580 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
33603 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
33626 TACCTATTACATCATAT
1 TACCTATTACATTATAT
33643 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:34100 original size:39 final size:39
Alignment explanation
Indices: 34046--34171 Score: 234
Period size: 39 Copynumber: 3.2 Consensus size: 39
34036 TCAAGTTGTA
34046 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
34085 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
1 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
* *
34124 GATTTTGATTTCCTTTTGCTTGGCACCATATGAGCTTTG
1 GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
34163 GATTTTGAT
1 GATTTTGAT
34172 GAGCATCGGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.17, C:0.13, G:0.21, T:0.48
Consensus pattern (39 bp):
GATTTTGATTTCCTTTTGCTTGGCATCATATGAGATTTG
Found at i:34453 original size:18 final size:18
Alignment explanation
Indices: 34430--34466 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
34420 TGAAATATAT
34430 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
34448 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
34466 A
1 A
34467 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:34742 original size:25 final size:25
Alignment explanation
Indices: 34714--34764 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
34704 ATAATCCAAA
*
34714 TAATGTACCCATAACAATGTTCAAT
1 TAATGTACCCACAACAATGTTCAAT
*
34739 TAATGTACCCACAACAATGTTTAAT
1 TAATGTACCCACAACAATGTTCAAT
34764 T
1 T
34765 GATTTGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (25 bp):
TAATGTACCCACAACAATGTTCAAT
Found at i:35091 original size:23 final size:22
Alignment explanation
Indices: 35029--35100 Score: 90
Period size: 23 Copynumber: 3.2 Consensus size: 22
35019 ACACTTTACA
*
35029 ATATAACCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
*
35052 ATATAACGATACCTATTACATT
1 ATATAACGCTACCTATTACATT
* *
35074 ATATAAGGGCTACCTATTACATC
1 ATATAA-CGCTACCTATTACATT
35097 ATAT
1 ATAT
35101 GTTTACCTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 20 0.47
23 23 0.53
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.35
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:35519 original size:23 final size:23
Alignment explanation
Indices: 35457--35528 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
35447 ACACTTTACA
* *
35457 ATATAACCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
*
35480 ATA-AAACGATACCTATTACATT
1 ATATAAACGCTACCTATTACATT
** *
35502 ATATAAGGGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
35525 ATAT
1 ATAT
35529 GTTTACCTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
22 19 0.46
23 22 0.54
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:35909 original size:21 final size:20
Alignment explanation
Indices: 35892--35948 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 20
35882 CAATATAACC
35892 ACTACCTATTACATTATAAA
1 ACTACCTATTACATTATAAA
*
35912 ACGATACCTATTACATTATAAGG
1 AC--TACCTATTACATTATAA-A
*
35935 GCTACCTATTACAT
1 ACTACCTATTACAT
35949 CATATGTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 2 0.06
21 12 0.38
22 17 0.53
23 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (20 bp):
ACTACCTATTACATTATAAA
Found at i:36334 original size:21 final size:22
Alignment explanation
Indices: 36309--36360 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
36299 ACACTTTACA
*
36309 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
36332 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
36355 ATATAA
1 ATATAA
36361 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:36345 original size:23 final size:23
Alignment explanation
Indices: 36319--36381 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
36309 ATATAACCAC
36319 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
36342 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
36365 TACCTATTACATCATAT
1 TACCTATTACATTATAT
36382 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:36504 original size:854 final size:858
Alignment explanation
Indices: 34793--36874 Score: 3956
Period size: 854 Copynumber: 2.4 Consensus size: 858
34783 CAATTTGAAT
* *
34793 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAT-AAATAAT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
*
34857 ATTTAGAATTTTTAATTTAATAATAATATAT--CGTAACGTAAAAAATAAATCATTATACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
34920 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
*
34985 GAAAAAAGTATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
*
35050 TTATATAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATA
261 TTATAAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATA
35115 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAACTTATGTAATTTATGT
326 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
35179 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
391 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
35244 CAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAATTTAATAATAA
456 CAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAATTTAATAATAA
35309 TATATACCGTAACGTAAAAAATAAATCATTAGAAGCCTATAATTACTAAATTAATATCTTAAAAC
521 TATATACCGTAACGTAAAAAATAAATCATTAGAAGCCTATAATTACTAAATTAATATCTTAAAAC
35374 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
586 TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
*
35439 AATGATAGACACTTTACAATATAACCACTACCTATTACATTATAAAACGATACCTATTACATTAT
651 AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATAAAACGATACCTATTACATTAT
35504 ATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
716 ATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
35569 AAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTAACAGTGTTTCATGT
781 AAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTAACAGTGTTTCATGT
35634 TTTCCACCTACAA
846 TTTCCACCTACAA
35647 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
35712 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAATAAATCATTAGACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
35776 TAATTACTAAATTAATATCTTAAAACTCACTC-AAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
35840 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
35905 TTATAAAACGATACCTATTACA-T-TATAAGGGCTACCTATTACATCATATGTTTACCTATTATA
261 TTATAAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATA
35968 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
326 TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
*
36033 TTCAATTTTTTTAACAGTGTTTCATGTTTTTCACCTACAATATTGATTTAATAATTTCATTTGCA
391 TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
36098 CAAAAAATTATTTGATTGTTTTTATA-TTTATAAAATATTATTTAGAATTTTTAATTTAATAATA
456 CAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAA-TTTTAATTTAATAATA
*
36162 ATATATACCGTAACGT-AAAAAT-AATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAA
520 ATATATACCGTAACGTAAAAAATAAATCATTAGAAGCCTATAATTACTAAATTAATATCTTAAAA
36225 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAA
585 CTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAA
36290 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATATAAACGATACCTATTACATT
650 AAAGGATAGACACTTTACAATATAACCACTACCTATTACATTATA-AAACGATACCTATTACATT
36355 ATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA
714 ATATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATA
36420 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTTAACAGTGTTTCA
779 AAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAA-TTTTTTAACAGTGTTTCA
36485 TGTTTTCCACCTACAA
843 TGTTTTCCACCTACAA
36501 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
36566 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
36631 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
36696 G-AAAAAGTATGGACAC-TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
36759 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATA-AAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
36824 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTATAAAA
325 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTT-TAAAA
36875 ATTCGAGACC
Statistics
Matches: 1207, Mismatches: 8, Indels: 22
0.98 0.01 0.02
Matches are distributed among these distances:
852 149 0.12
853 235 0.19
854 397 0.33
855 241 0.20
856 88 0.07
857 92 0.08
858 5 0.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (858 bp):
TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
TTATAAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTATA
TTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGT
TTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAATATTGATTTAATAATTTCATTTGCA
CAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATTATTTAGAATTTTAATTTAATAATAA
TATATACCGTAACGTAAAAAATAAATCATTAGAAGCCTATAATTACTAAATTAATATCTTAAAAC
TCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAA
AAGGATAGACACTTTACAATATAACCACTACCTATTACATTATAAAACGATACCTATTACATTAT
ATAAGGGCTACCTATTACATCATATGTTTACCTATTATATTGAAAGTGTCCATACTTTTTATAAA
AAGGATCGATACTTTTTTTAAAACTTATGTAATTTATGTTTCAATTTTTTAACAGTGTTTCATGT
TTTCCACCTACAA
Found at i:36722 original size:20 final size:20
Alignment explanation
Indices: 36697--36735 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36687 TTCCACAGTG
* *
36697 AAAAAGTATGGACACTTTAT
1 AAAAAGGATAGACACTTTAT
36717 AAAAAGGATAGACACTTTA
1 AAAAAGGATAGACACTTTA
36736 CAATATAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (20 bp):
AAAAAGGATAGACACTTTAT
Found at i:36763 original size:21 final size:22
Alignment explanation
Indices: 36738--36789 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
36728 ACACTTTACA
*
36738 ATATAACCACTACCTATTACATT
1 ATATAAACA-TACCTATTACATT
36761 ATATAAACGATACCTATTACATT
1 ATATAAAC-ATACCTATTACATT
36784 ATATAA
1 ATATAA
36790 GGGCTACCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 26 0.96
24 1 0.04
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (22 bp):
ATATAAACATACCTATTACATT
Found at i:36774 original size:23 final size:23
Alignment explanation
Indices: 36748--36810 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
36738 ATATAACCAC
36748 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
** *
36771 TACCTATTACATTATATAAGGGC
1 TACCTATTACATTATATAAACGA
*
36794 TACCTATTACATCATAT
1 TACCTATTACATTATAT
36811 GTTTACCTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:36850 original size:429 final size:431
Alignment explanation
Indices: 34793--36874 Score: 3966
Period size: 428 Copynumber: 4.9 Consensus size: 431
34783 CAATTTGAAT
* *
34793 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTAT-AAATAAT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
*
34857 ATTTAGAATTTTTAATTTAATAATAATATAT--CGTAACGTAAAAAATAAATCATTATACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
34920 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
*
34985 GAAAAAAGTATAGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
35050 TTATAT-AACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
35114 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAACTTATGTAATTTATG
326 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
35178 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
391 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
35219 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
*
35284 ATTTAGAA-TTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGAAGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
35348 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
*
35413 GAAAAAAGTATGGACACTTTTATAAAAATGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
35478 TTATA-AAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
35542 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
326 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
35607 TTTCAA-TTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
391 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
35647 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
35712 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAATAAATCATTAGACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
35776 TAATTACTAAATTAATATCTTAAAACTCACTC-AAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
35840 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
35905 TTATA-AAACGATACCTATTACA-T-TATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
35967 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
326 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
*
36032 TTTCAATTTTTTTAACAGTGTTTCATGTTTTTCACCTACAA
391 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
36073 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATA-TTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
36137 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGT-AAAAAT-AATCATTAGACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
36200 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
36265 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
36330 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
36395 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
326 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
36460 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
391 TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
36501 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
1 TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
36566 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
66 ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
36631 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
131 TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
36696 G-AAAAAGTATGGACAC-TTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
196 GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
36759 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
261 TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
36824 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTATAAAA
326 ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTT-TAAAA
36875 ATTCGAGACC
Statistics
Matches: 1631, Mismatches: 10, Indels: 26
0.98 0.01 0.02
Matches are distributed among these distances:
424 48 0.03
425 272 0.17
426 180 0.11
427 133 0.08
428 616 0.38
429 274 0.17
430 26 0.02
431 82 0.05
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (431 bp):
TATTGATTTAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTTATATTTTATAAAATATT
ATTTAGAATTTTTAATTTAATAATAATATATACCGTAACGTAAAAAATAAATCATTAGACGCCTA
TAATTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGT
GAAAAAAGTATGGACACTTTTATAAAAAGGATAGACACTTTACAATATAACCACTACCTATTACA
TTATATAAACGATACCTATTACATTATATAAGGGCTACCTATTACATCATATGTTTACCTATTAT
ATTGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAACTTATGTAATTTATG
TTTCAATTTTTTTAACAGTGTTTCATGTTTTCCACCTACAA
Found at i:38080 original size:22 final size:23
Alignment explanation
Indices: 38049--38091 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
38039 TTCCACAGTG
38049 AAAAAAGTATCGACAC-TTTTAT
1 AAAAAAGTATCGACACATTTTAT
*
38071 AAAAAGGTATCGACACATTTT
1 AAAAAAGTATCGACACATTTT
38092 TATACCGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (23 bp):
AAAAAAGTATCGACACATTTTAT
Found at i:38392 original size:181 final size:183
Alignment explanation
Indices: 38087--38595 Score: 848
Period size: 181 Copynumber: 2.8 Consensus size: 183
38077 GTATCGACAC
38087 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
* *
38152 TGTCGACACTTTTTTAAATGGTATCGACACATTTTTCTTCCAATCTGAACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAATGGTATCGACACCTTTTTCTTCCAATCTGGACATAAAGTACCGACAC
38217 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCAT-AAACCGGT
131 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
*
38269 ATTTTTATATCGGTTATATTAC-AAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
38333 TGTCGACACTTTTTTAAATGGTATCGACACCTTTTTCTTCCAATCTGGACATAAAGTACCGACAC
66 TGTCGACACTTTTTTAAATGGTATCGACACCTTTTTCTTCCAATCTGGACATAAAGTACCGACAC
*
38398 AATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGT
131 AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
* *
38451 ATATTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTTTTTT
1 ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATG---TGT
* * * * *
38516 CAA--TCGACACTTTTTTAAATGGTATCGACA-CATTTTCTTTCATTCTGGACATAAAGTACAGA
63 AAATGTCGACACTTTTTTAAATGGTATCGACACCTTTTTCTTCCAATCTGGACATAAAGTACCGA
*
38578 CACAATATTAAAAAGTGT
128 CACAATATTAGAAAGTGT
38596 GAAAACTTTG
Statistics
Matches: 309, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
181 148 0.48
182 49 0.16
183 81 0.26
184 27 0.09
186 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.37
Consensus pattern (183 bp):
ATTTTTATACCGGTTATATTACAAAATTATCTATTACATTATAAATCTGGGTTCCGATGTGTAAA
TGTCGACACTTTTTTAAATGGTATCGACACCTTTTTCTTCCAATCTGGACATAAAGTACCGACAC
AATATTAGAAAGTGTCGATAAAGGTTGTAGACCTATTCGCTCATAAAACCGGT
Found at i:39787 original size:3 final size:3
Alignment explanation
Indices: 39779--39849 Score: 72
Period size: 3 Copynumber: 24.0 Consensus size: 3
39769 ACTTGTTTGG
* * ** *
39779 ATC ATC ATC TTC ATC ATC ATC ATC ATC GTC ATC ATC -TC ATC GCC AGC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* *
39826 TTC ATC GTC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC
39850 GTCAGCTTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.25, C:0.35, G:0.06, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:39796 original size:12 final size:12
Alignment explanation
Indices: 39779--39864 Score: 64
Period size: 12 Copynumber: 7.0 Consensus size: 12
39769 ACTTGTTTGG
39779 ATCATCATCTTC
1 ATCATCATCTTC
*
39791 ATCATCATCATC
1 ATCATCATCTTC
*
39803 ATCGTCATCATCTC
1 ATCATCATC-T-TC
** *
39817 ATCGCCAGCTTC
1 ATCATCATCTTC
* *
39829 ATCGTCATCATC
1 ATCATCATCTTC
*
39841 ATCATCATCGTC
1 ATCATCATCTTC
* *
39853 AGCTTCATCTTC
1 ATCATCATCTTC
39865 TGCGACCGCT
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
12 49 0.83
13 1 0.02
14 9 0.15
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.35
Consensus pattern (12 bp):
ATCATCATCTTC
Found at i:41751 original size:195 final size:197
Alignment explanation
Indices: 41316--42034 Score: 1317
Period size: 198 Copynumber: 3.7 Consensus size: 197
41306 TATTTAAATT
41316 AGTATCG--ACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
*
41379 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTGGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
*
41444 ATCGACACTTTTTTATATGGATCGACACTTTATGGGTGCACCTTGTTTTCCATTCATTCTGGGAA
131 ATCGACACTTTTATATATGGATCGACACTTTATGGGTGCACCTTG-TTTCCATTCATTCTGGGAA
41509 AAA
195 AAA
41512 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATA-TCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
41576 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATAC-TTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
41640 ATCGACACTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAAA
131 ATCGACACTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAAA
41705 AA
196 AA
*
41707 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCAT-AAATCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
41771 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
*
41836 ATCGACACTTTTTTATATATGGATCGACACTTTATGGGGTGCACCTTGTTTCCATTCATCCTGGG
131 ATCGACAC--TTTTATATATGGATCGACACTTTAT-GGGTGCACCTTGTTTCCATTCATTCTGGG
41901 AAAAA
193 AAAAA
41906 AGTATCGACACAAAC--TATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
1 AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
41969 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
66 TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
42034 A
131 A
42035 AAAATTACAT
Statistics
Matches: 510, Mismatches: 5, Indels: 14
0.96 0.01 0.03
Matches are distributed among these distances:
195 119 0.23
196 108 0.21
197 99 0.19
198 136 0.27
199 48 0.09
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (197 bp):
AGTATCGACACAAACTATATTAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTA
TAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGGG
ATCGACACTTTTATATATGGATCGACACTTTATGGGTGCACCTTGTTTCCATTCATTCTGGGAAA
AA
Found at i:42052 original size:45 final size:45
Alignment explanation
Indices: 41988--42079 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
41978 CGGTTAGATT
41988 GAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
1 GAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
42033 GAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
1 GAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
42078 GA
1 GA
42080 TGACACTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (45 bp):
GAAAAATTACATATTACATTATACTTTTGGGTTCGATGATTTTGG
Found at i:42268 original size:19 final size:19
Alignment explanation
Indices: 42236--42283 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
42226 ATTATATTCC
42236 ATACAAAA-TATAAATCGT
1 ATACAAAATTATAAATCGT
*
42254 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
42273 ATACAAAATTA
1 ATACAAAATTA
42284 AGTCGACATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 8 0.29
19 20 0.71
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:44190 original size:21 final size:21
Alignment explanation
Indices: 44150--44214 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
44140 CCCCTTATTC
* *
44150 CTCTCGAGTGTATCTTCGACT
1 CTCTCGAGTTTCTCTTCGACT
*
44171 CTCTCGAGTTTCTCTACGACT
1 CTCTCGAGTTTCTCTTCGACT
* *
44192 -TGATCAAGTTTCTCTTCGACT
1 CT-CTCGAGTTTCTCTTCGACT
44213 CT
1 CT
44215 TGATTGTCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.15, C:0.29, G:0.15, T:0.40
Consensus pattern (21 bp):
CTCTCGAGTTTCTCTTCGACT
Found at i:46462 original size:17 final size:18
Alignment explanation
Indices: 46440--46482 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
46430 ATATATCCGG
46440 TATCATT-TTACCGGTTT
1 TATCATTGTTACCGGTTT
46457 TATCATTTTGTTACCGGTTT
1 TATCA--TTGTTACCGGTTT
46477 TATCAT
1 TATCAT
46483 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 1 0.04
19 2 0.09
20 15 0.65
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (18 bp):
TATCATTGTTACCGGTTT
Found at i:46472 original size:20 final size:20
Alignment explanation
Indices: 46445--46491 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
46435 TCCGGTATCA
46445 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
46464 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
46485 TTTTACC
1 TTTTACC
46492 TGTTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:46503 original size:29 final size:29
Alignment explanation
Indices: 46471--46530 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
46461 ATTTTGTTAC
46471 CGGTTTTATCATATTTTTACCTGTTATAT
1 CGGTTTTATCATATTTTTACCTGTTATAT
46500 CGGTTTTATCATATTTTTACCTGTTATAT
1 CGGTTTTATCATATTTTTACCTGTTATAT
46529 CG
1 CG
46531 TTGTGGATCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.20, C:0.15, G:0.12, T:0.53
Consensus pattern (29 bp):
CGGTTTTATCATATTTTTACCTGTTATAT
Found at i:46686 original size:20 final size:19
Alignment explanation
Indices: 46642--46686 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
46632 CACTTTTAAA
46642 TTTACCGGTTTTATCATTT
1 TTTACCGGTTTTATCATTT
46661 TGTTACCGGTTTTATCATATT
1 T-TTACCGGTTTTATCAT-TT
46682 TTTAC
1 TTTAC
46687 ATGGTATATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.04
20 20 0.83
21 3 0.12
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.56
Consensus pattern (19 bp):
TTTACCGGTTTTATCATTT
Found at i:47154 original size:228 final size:226
Alignment explanation
Indices: 46753--47194 Score: 787
Period size: 228 Copynumber: 1.9 Consensus size: 226
46743 TTAAAACTGC
46753 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
1 TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
*
46818 TTAATTTAATAATTTAATTTACACAAAATTATATTTGATTGTTTTGATATTTTATAAAATATTAT
66 TTAATTTAATAATTTAATTTACACAAAAATATATTTGATTGTTTTGATATTTTATAAAATATTAT
* *
46883 TTAGAATTTAAATTTAACAATATTAACCAAATATAATAATAAATATGTTTTCAACAGTGAAATAA
131 TTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTC-ACAGTGAAATAA
46948 GTATGGACACTTTTATAAAAATGATATATACT
195 GTATGGACACTTTTATAAAAATGATATATACT
*
46980 TTTTGAAAGTTATGTAATTTATGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAAT
1 TTTT-AAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAAT
*
47045 ATTAATTTAATAATTTCATTTACACAAAAA-ATTATTTGATTGTTTTGATATTTTATAAAATATT
65 ATTAATTTAATAATTTAATTTACACAAAAATA-TATTTGATTGTTTTGATATTTTATAAAATATT
* *
47109 ATTTAGATTTTAAATTTAACAATATTAACTAAAGATAATAATAAATATATTTTCACAGTGAAATA
129 ATTTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATA
47174 AGTATGGACACTTTTATAAAA
194 AGTATGGACACTTTTATAAAA
47195 TGGATAGATA
Statistics
Matches: 206, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
227 37 0.18
228 169 0.82
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (226 bp):
TTTTAAAGTTATGTAATTTATGTTTCAATTTATTTAATAGTGTTTCATGTTTTCCACCTACAATA
TTAATTTAATAATTTAATTTACACAAAAATATATTTGATTGTTTTGATATTTTATAAAATATTAT
TTAGAATTTAAATTTAACAATATTAACCAAAGATAATAATAAATATATTTTCACAGTGAAATAAG
TATGGACACTTTTATAAAAATGATATATACT
Found at i:48626 original size:36 final size:36
Alignment explanation
Indices: 48578--48940 Score: 424
Period size: 36 Copynumber: 10.1 Consensus size: 36
48568 GTTTGATCCC
*
48578 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACC
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* * * *
48614 GAACCTCTGGCTAAGCCTCAACTTGAATTAACTACC
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
*
48650 GAACCTCAGGCTAAGCCTAAACATGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* * **
48686 GAAACTCAGGCAAAGCCTCGGCATGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* **
48722 GAACCTCAGGCAAAGCCTCGTCATGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* ** *
48758 GAACCTCATGCTAAGCCTCGGCAAGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* ** *
48794 GAACCTCATGCTAAGCCTCGGCAAGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* *
48830 GAACCTCTGGCTAAGCCTAAACATGAATTAGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
* *
48866 AAACCTCAGGCTGAGCC-CAAACATGAATTAG-TAACT
1 GAACCTCAGGCTAAGCCTC-AACATGAATTAGCT-ACT
* * * * *
48902 GAACCACGGGCTGAGCCTCAAGATGAATTGGCTACT
1 GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
48938 GAA
1 GAA
48941 TCTGGGGCTA
Statistics
Matches: 289, Mismatches: 34, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
35 1 0.00
36 286 0.99
37 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (36 bp):
GAACCTCAGGCTAAGCCTCAACATGAATTAGCTACT
Found at i:52640 original size:3 final size:3
Alignment explanation
Indices: 52632--52689 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
52622 TCACCATTTT
* *
52632 TTA TTA TTA AT- TTA TTA TAA TTA TTA TTA TTAA TTA TTA TCT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA T-TA TTA
52677 CTTA TTA TTA TTA
1 -TTA TTA TTA TTA
52690 ATAATCATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
2 2 0.04
3 37 0.80
4 7 0.15
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:52662 original size:23 final size:23
Alignment explanation
Indices: 52632--52686 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
52622 TCACCATTTT
52632 TTATTATTAATTTATTATAATTA-
1 TTATTATTAA-TTATTATAATTAC
**
52655 TTATTATTAATTATTATCTTTAC
1 TTATTATTAATTATTATAATTAC
52678 TTATTATTA
1 TTATTATTA
52687 TTAATAATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 10 0.34
23 19 0.66
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTAATTATTATAATTAC
Found at i:52681 original size:26 final size:24
Alignment explanation
Indices: 52632--52691 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 24
52622 TCACCATTTT
52632 TTATTATTAA-TTTATTATAATTA
1 TTATTATTAATTTTATTATAATTA
* *
52655 TTATTATTAATTATTATCTTTACTTA
1 TTATTATTAATT-TTAT-TATAATTA
52681 TTATTATTAAT
1 TTATTATTAAT
52692 AATCATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 10 0.31
24 1 0.03
25 4 0.12
26 17 0.53
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATTATTAATTTTATTATAATTA
Found at i:52945 original size:13 final size:13
Alignment explanation
Indices: 52906--52950 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
52896 TCCTCGCGTG
52906 TCAGCCTCAC-TGC
1 TCAGCCTC-CTTGC
*
52919 CCAGCCTCCTTGC
1 TCAGCCTCCTTGC
52932 TCAGCCTCCTTGC
1 TCAGCCTCCTTGC
52945 TC-GCCT
1 TCAGCCT
52951 ATAACTCGCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 5 0.17
13 24 0.83
ACGTcount: A:0.09, C:0.49, G:0.16, T:0.27
Consensus pattern (13 bp):
TCAGCCTCCTTGC
Found at i:55846 original size:15 final size:16
Alignment explanation
Indices: 55826--55855 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
55816 AAAATGAATT
55826 ACATTTTCT-GAAAAA
1 ACATTTTCTCGAAAAA
55841 ACATTTTCTCGAAAA
1 ACATTTTCTCGAAAA
55856 CGTTTTACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (16 bp):
ACATTTTCTCGAAAAA
Found at i:56100 original size:31 final size:29
Alignment explanation
Indices: 56018--56101 Score: 82
Period size: 33 Copynumber: 2.8 Consensus size: 29
56008 TATTTAATAT
*
56018 TAAAAATATTAT-TTTTATAATTTTATTAA
1 TAAAAATATTATAATTTAT-ATTTTATTAA
56047 TAAAAATATTA-ATATTGGTATATTTTATTGAAA
1 TAAAAATATTATA-ATT--TATATTTTATT--AA
*
56080 TAAAAATATTATAAATTATATT
1 TAAAAATATTATAATTTATATT
56102 AATTATTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
29 11 0.24
30 2 0.04
31 14 0.30
32 3 0.07
33 15 0.33
34 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
TAAAAATATTATAATTTATATTTTATTAA
Found at i:57057 original size:114 final size:114
Alignment explanation
Indices: 56857--57083 Score: 391
Period size: 114 Copynumber: 2.0 Consensus size: 114
56847 CCATAGCTGG
* *
56857 GAGATTCCTGCCCGACGACCAAGCTTTAACCCTCTGCTCCCTCATGCATGCGTTGCATCCATAGA
1 GAGATTCCTACCCGACGACCAAGCTTTAACCCTCTGCTCCCTCATGCATGCCTTGCATCCATAGA
*
56922 TGGGAGATTCTTGCATCCCTAGCTGCATTATTGCATCGTTAATTTAGCA
66 TGGGAGATTCCTGCATCCCTAGCTGCATTATTGCATCGTTAATTTAGCA
* * * *
56971 GAGATTCCTACTCGGCGACCAAGCTTTAACCCTTTGCTCCCTCATGCATGCCTTGCATCCATAGC
1 GAGATTCCTACCCGACGACCAAGCTTTAACCCTCTGCTCCCTCATGCATGCCTTGCATCCATAGA
57036 TGGGAGATTCCTGCATCCCTAGCTGCATTATTGCATCGTTAATTTAGC
66 TGGGAGATTCCTGCATCCCTAGCTGCATTATTGCATCGTTAATTTAGC
57084 TGTTAAATGC
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 106 1.00
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (114 bp):
GAGATTCCTACCCGACGACCAAGCTTTAACCCTCTGCTCCCTCATGCATGCCTTGCATCCATAGA
TGGGAGATTCCTGCATCCCTAGCTGCATTATTGCATCGTTAATTTAGCA
Found at i:57404 original size:21 final size:21
Alignment explanation
Indices: 57375--57418 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
57365 AATTTAGTTA
57375 ATTAATTTGTTAGTGTAAATT
1 ATTAATTTGTTAGTGTAAATT
* * *
57396 ATTAGTTTGTTAGTTTAAGTT
1 ATTAATTTGTTAGTGTAAATT
57417 AT
1 AT
57419 ATTATATTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAATTTGTTAGTGTAAATT
Found at i:57428 original size:28 final size:30
Alignment explanation
Indices: 57395--57457 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
57385 TAGTGTAAAT
57395 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
*
57423 TATTAGTTTGTTATTTTAAGTTATATATTA
1 TATTAGTTTGTTAGTTTAAGTTATATATTA
57453 TATTA
1 TATTA
57458 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.59
29 1 0.03
30 12 0.38
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (30 bp):
TATTAGTTTGTTAGTTTAAGTTATATATTA
Found at i:57901 original size:17 final size:17
Alignment explanation
Indices: 57879--57939 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
57869 GATAATTTCA
57879 GTTTAAAAAAATATTGT
1 GTTTAAAAAAATATTGT
* *
57896 GTTTAAAAATATTTAGTGTT
1 GTTTAAAAA-A-ATATTG-T
*
57916 GTTTAAAAAAAATATTTT
1 GTTT-AAAAAAATATTGT
57934 GTTTAA
1 GTTTAA
57940 TTTATATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
17 11 0.31
18 6 0.17
19 7 0.20
20 6 0.17
21 5 0.14
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (17 bp):
GTTTAAAAAAATATTGT
Found at i:61431 original size:49 final size:49
Alignment explanation
Indices: 61244--61564 Score: 472
Period size: 49 Copynumber: 6.6 Consensus size: 49
61234 TTTGATTTAG
* * * * *
61244 TAATGATTTGCTAATCATGATT--TAATAATGAATTTA-TATTTAAAATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTA-TTAATATT
* *
61291 ATAATAATTAT-TTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 -TAATGATT-TGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
61341 TAATGATTTGATAGTAAT-ATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
61389 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
61438 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
* *
61487 TAATGATTTGGTAGTAATGATTAGTAATAATTAAATTATTGTTAATATT
1 TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
*
61536 TAATGATTTGATAGTAATGATTTAGTAAT
1 TAATGATTTGGTAGTAATGA-TTAGTAAT
61565 TATTAGTAAT
Statistics
Matches: 254, Mismatches: 12, Indels: 12
0.91 0.04 0.04
Matches are distributed among these distances:
48 64 0.25
49 160 0.63
50 28 0.11
51 2 0.01
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (49 bp):
TAATGATTTGGTAGTAATGATTAGTAATAATGAAATTATTATTAATATT
Found at i:61793 original size:12 final size:11
Alignment explanation
Indices: 61771--62055 Score: 105
Period size: 11 Copynumber: 23.3 Consensus size: 11
61761 TAACCATAAA
61771 AATGATTTAAT
1 AATGATTTAAT
61782 AATGATTT--T
1 AATGATTTAAT
61791 AAT-ATTTAAT
1 AATGATTTAAT
*
61801 GATTTGATGATTTAGT
1 -A----ATGATTTAAT
61817 AATGATTTTAAT
1 AATGA-TTTAAT
*
61829 ATTATAATTTAAT
1 A--ATGATTTAAT
61842 AATGATTTAGTAAT
1 AATGA-TT--TAAT
*
61856 AATCATTATAAT
1 AATGATT-TAAT
61868 AATGATTTAAT
1 AATGATTTAAT
61879 AATGACTTTAATATTT
1 AATGA-TTT-A-A--T
*
61895 AATGATTTGAT
1 AATGATTTAAT
*
61906 -A--ATTTAGT
1 AATGATTTAAT
61914 AATGATTTGATAAT
1 AATGA-TT--TAAT
*
61928 AATTATTATAAT
1 AATGATT-TAAT
61940 AATGATTTAAT
1 AATGATTTAAT
* *
61951 AATAATCATCACAAT
1 AATGAT--T--TAAT
61966 AATGATTTAATAAT
1 AATGA-TT--TAAT
*
61980 AATCATTATAAT
1 AATGATT-TAAT
61992 AATGATTTAATAGT
1 AATGATTT-A-A-T
62006 AATGATTTAAT
1 AATGATTTAAT
*
62017 AATGATTTAGT
1 AATGATTTAAT
*
62028 AATTATTTTATAAT
1 AATGA--TT-TAAT
*
62042 AACGATTTAAT
1 AATGATTTAAT
62053 AAT
1 AAT
62056 TATTACTAAT
Statistics
Matches: 212, Mismatches: 26, Indels: 72
0.68 0.08 0.23
Matches are distributed among these distances:
8 9 0.04
9 5 0.02
10 2 0.01
11 58 0.27
12 49 0.23
13 20 0.09
14 43 0.20
15 13 0.06
16 13 0.06
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (11 bp):
AATGATTTAAT
Found at i:61799 original size:19 final size:19
Alignment explanation
Indices: 61775--61836 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
61765 CATAAAAATG
61775 ATTTAATAATGATTTTAAT
1 ATTTAATAATGATTTTAAT
*
61794 A-TT--TAATGA-TTTGAT
1 ATTTAATAATGATTTTAAT
*
61809 GATTTAGTAATGATTTTAAT
1 -ATTTAATAATGATTTTAAT
61829 ATTATAAT
1 ATT-TAAT
61837 TTAATAATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 2 0.06
18 2 0.06
19 10 0.29
20 8 0.24
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (19 bp):
ATTTAATAATGATTTTAAT
Found at i:61802 original size:16 final size:17
Alignment explanation
Indices: 61780--61836 Score: 64
Period size: 16 Copynumber: 3.3 Consensus size: 17
61770 AAATGATTTA
61780 ATAATGATTTTAATATT
1 ATAATGATTTTAATATT
*
61797 -TAATGA-TTTGATGATTT
1 ATAATGATTTTAAT-A-TT
61814 AGTAATGATTTTAATATT
1 A-TAATGATTTTAATATT
61832 ATAAT
1 ATAAT
61837 TTAATAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 6 0.18
18 3 0.09
19 7 0.21
20 5 0.15
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
ATAATGATTTTAATATT
Found at i:61872 original size:26 final size:26
Alignment explanation
Indices: 61816--62055 Score: 207
Period size: 26 Copynumber: 9.6 Consensus size: 26
61806 GATGATTTAG
* *
61816 TAATGATTTTAAT-ATTATAATT-TAA
1 TAATGA-TTTAATAATAATCATTATAA
*
61841 TAATGATTTAGTAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
*
61867 TAATGATTTAATAATGA-C--T-T--
1 TAATGATTTAATAATAATCATTATAA
* * * *
61887 TAAT-ATTTAATGATTTGATAATT-TAG
1 TAATGATTTAAT-A-ATAATCATTATAA
* *
61913 TAATGATTTGATAATAATTATTATAA
1 TAATGATTTAATAATAATCATTATAA
* *
61939 TAATGATTTAATAATAATCATCACAA
1 TAATGATTTAATAATAATCATTATAA
61965 TAATGATTTAATAATAATCATTATAA
1 TAATGATTTAATAATAATCATTATAA
* *
61991 TAATGATTTAATAGTAATGATT-TAA
1 TAATGATTTAATAATAATCATTATAA
* * *
62016 TAATGATTTAGTAATTAT-TTTATAA
1 TAATGATTTAATAATAATCATTATAA
*
62041 TAACGATTTAATAAT
1 TAATGATTTAATAAT
62056 TATTACTAAT
Statistics
Matches: 177, Mismatches: 26, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
19 7 0.04
20 5 0.03
21 3 0.02
22 1 0.01
23 1 0.01
24 9 0.05
25 54 0.31
26 91 0.51
27 6 0.03
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (26 bp):
TAATGATTTAATAATAATCATTATAA
Found at i:61910 original size:16 final size:17
Alignment explanation
Indices: 61877--61927 Score: 52
Period size: 19 Copynumber: 2.9 Consensus size: 17
61867 TAATGATTTA
*
61877 ATAATGACTTTAAT-ATT
1 ATAATGA-TTTGATAATT
61894 -TAATGATTTGATAATTT
1 ATAATGATTTGATAA-TT
61911 AGTAATGATTTGATAAT
1 A-TAATGATTTGATAAT
61928 AATTATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 5 0.17
16 7 0.24
17 2 0.07
18 1 0.03
19 14 0.48
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (17 bp):
ATAATGATTTGATAATT
Found at i:61999 original size:97 final size:97
Alignment explanation
Indices: 61771--61979 Score: 316
Period size: 97 Copynumber: 2.1 Consensus size: 97
61761 TAACCATAAA
*
61771 AATGATTTAATAATGAT-TTTAATATTTAATGATTTGATGATTTAGTAATGATTTTAATATTATA
1 AATGATTTAATAATGATCTTTAATATTTAATGATTTGATAATTTAGTAATGATTTTAATATTAT-
* * * *
61835 ATTTAATAATGATTTAGTAATAATCATTATAAT
65 ATATAATAATGATTTAATAATAATCATCACAAT
61868 AATGATTTAATAATGA-CTTTAATATTTAATGATTTGATAATTTAGTAATGATTTGATAATAATT
1 AATGATTTAATAATGATCTTTAATATTTAATGATTTGATAATTTAGTAATGATTT--TAAT-ATT
61932 AT-TATAATAATGATTTAATAATAATCATCACAAT
63 ATATATAATAATGATTTAATAATAATCATCACAAT
61966 AATGATTTAATAAT
1 AATGATTTAATAAT
61980 AATCATTATA
Statistics
Matches: 103, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
97 52 0.50
98 42 0.41
99 4 0.04
100 5 0.05
ACGTcount: A:0.43, C:0.02, G:0.09, T:0.46
Consensus pattern (97 bp):
AATGATTTAATAATGATCTTTAATATTTAATGATTTGATAATTTAGTAATGATTTTAATATTATA
TATAATAATGATTTAATAATAATCATCACAAT
Found at i:62215 original size:59 final size:56
Alignment explanation
Indices: 62140--62260 Score: 188
Period size: 59 Copynumber: 2.1 Consensus size: 56
62130 TCGAATTTAT
*
62140 TAATGATTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATTATTATTAA
1 TAATGATTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATGATTATTAA
* *
62196 TAATGATTTATTATTAATATTTAATTATTTGATACTAATGATTTACTAATGATTATTAG
1 TAATGATTT-TTA--AATATTTAATGATTTGATACTAATGATTTACTAATGATTATTAA
62255 TAATGA
1 TAATGA
62261 AATTATAATA
Statistics
Matches: 59, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
56 9 0.15
57 3 0.05
59 47 0.80
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (56 bp):
TAATGATTTTTAAATATTTAATGATTTGATACTAATGATTTACTAATGATTATTAA
Found at i:62219 original size:24 final size:25
Alignment explanation
Indices: 62192--62278 Score: 60
Period size: 24 Copynumber: 3.6 Consensus size: 25
62182 CTAATTATTA
62192 TTAATAATGATTTATTATTAAT-AT
1 TTAATAATGATTTATTATTAATAAT
* *
62216 TTAAT--T-ATTTGA-TACTAATGAT
1 TTAATAATGATTT-ATTATTAATAAT
* *
62238 TTACTAATGA-TTATTAGTAATGAAAT
1 TTAATAATGATTTATTATTAAT--AAT
62264 TATAATAATGATTTA
1 T-TAATAATGATTTA
62279 ATACTAAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 16
0.70 0.07 0.23
Matches are distributed among these distances:
21 10 0.21
22 8 0.17
23 1 0.02
24 14 0.29
25 1 0.02
26 3 0.06
27 8 0.17
28 3 0.06
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.48
Consensus pattern (25 bp):
TTAATAATGATTTATTATTAATAAT
Found at i:62223 original size:17 final size:17
Alignment explanation
Indices: 62183--62224 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
62173 AATGATTTAC
62183 TAATTATTATTAATAAT
1 TAATTATTATTAATAAT
* * *
62200 GATTTATTATTAATATT
1 TAATTATTATTAATAAT
62217 TAATTATT
1 TAATTATT
62225 TGATACTAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TAATTATTATTAATAAT
Found at i:63460 original size:14 final size:14
Alignment explanation
Indices: 63427--63460 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
63417 TTTTAATCAA
*
63427 AATAAATATTTTCT
1 AATAAATATTTTAT
63441 AATAAATATTTTAT
1 AATAAATATTTTAT
*
63455 ATTAAA
1 AATAAA
63461 ATAGAGGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AATAAATATTTTAT
Found at i:64494 original size:15 final size:16
Alignment explanation
Indices: 64474--64506 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
64464 AAAAAAATTA
64474 AATATAAT-AACTTAT
1 AATATAATAAACTTAT
64489 AATATAATAAACTTAT
1 AATATAATAAACTTAT
64505 AA
1 AA
64507 AGTAACAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
AATATAATAAACTTAT
Found at i:64596 original size:30 final size:30
Alignment explanation
Indices: 64560--64665 Score: 133
Period size: 30 Copynumber: 3.5 Consensus size: 30
64550 TTCCCTTAAA
*
64560 CAACTAATAAGCTATTCTTTAATATAACTT
1 CAACTAATAAACTATTCTTTAATATAACTT
64590 CAACTAATAAACTATTCTTTAATATAACTT
1 CAACTAATAAACTATTCTTTAATATAACTT
* * *
64620 AAACTAATAAACGATTTTTTAATTATAA-TT
1 CAACTAATAAACTATTCTTTAA-TATAACTT
*
64650 CACTACTAAAAAACTA
1 CA--ACTAATAAACTA
64666 ATTAACTAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
30 51 0.77
31 5 0.08
32 10 0.15
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (30 bp):
CAACTAATAAACTATTCTTTAATATAACTT
Found at i:64823 original size:17 final size:17
Alignment explanation
Indices: 64801--64836 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
64791 TAAATTTTTT
64801 ACCCTAACCCTAAACTA
1 ACCCTAACCCTAAACTA
64818 ACCCTAACCCTAAACTA
1 ACCCTAACCCTAAACTA
64835 AC
1 AC
64837 AAACTAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (17 bp):
ACCCTAACCCTAAACTA
Found at i:65197 original size:22 final size:22
Alignment explanation
Indices: 65171--65244 Score: 105
Period size: 22 Copynumber: 3.4 Consensus size: 22
65161 ATGGAGCAGC
65171 GGGAGCAGGA-GAGCATGCAGTG
1 GGGAGCA-GACGAGCATGCAGTG
65193 GGGAGCAGACGAGCATGCAGTG
1 GGGAGCAGACGAGCATGCAGTG
* **
65215 GGGAGCAGACGAGCATACAACG
1 GGGAGCAGACGAGCATGCAGTG
65237 GGGAGCAG
1 GGGAGCAG
65245 GGCGCAGGAC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
21 2 0.04
22 46 0.96
ACGTcount: A:0.30, C:0.18, G:0.46, T:0.07
Consensus pattern (22 bp):
GGGAGCAGACGAGCATGCAGTG
Found at i:65319 original size:29 final size:29
Alignment explanation
Indices: 65253--65337 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
65243 AGGGCGCAGG
*
65253 ACAAGGTCG-CTGGGCGTGCATGGCGACCT
1 ACAAGGTCGCCT-GGCGTGCATGACGACCT
* *
65282 ACCATGTCGCCTGGCGTGCATGACGACCT
1 ACAAGGTCGCCTGGCGTGCATGACGACCT
* * *
65311 ACAAGGTCGCCCGGAGGGCATGACGAC
1 ACAAGGTCGCCTGGCGTGCATGACGAC
65338 TTATGAGTTG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 45 0.96
30 2 0.04
ACGTcount: A:0.20, C:0.31, G:0.34, T:0.15
Consensus pattern (29 bp):
ACAAGGTCGCCTGGCGTGCATGACGACCT
Found at i:68062 original size:12 final size:12
Alignment explanation
Indices: 68045--68070 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68035 TGGAAATGGT
68045 ACCCATTGCAAA
1 ACCCATTGCAAA
68057 ACCCATTGCAAA
1 ACCCATTGCAAA
68069 AC
1 AC
68071 GTATCATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.35, G:0.08, T:0.15
Consensus pattern (12 bp):
ACCCATTGCAAA
Found at i:69685 original size:32 final size:32
Alignment explanation
Indices: 69649--69720 Score: 128
Period size: 32 Copynumber: 2.2 Consensus size: 32
69639 ACTAATTTAA
69649 AATTTGTAATTCTCGATTACTTTAGTAAGAAT
1 AATTTGTAATTCTCGATTACTTTAGTAAGAAT
69681 AATTT-TAAATTCTCGATTACTTTAGTAAGAAT
1 AATTTGT-AATTCTCGATTACTTTAGTAAGAAT
69713 AATTTGTA
1 AATTTGTA
69721 TAAATGTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
31 1 0.03
32 36 0.95
33 1 0.03
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (32 bp):
AATTTGTAATTCTCGATTACTTTAGTAAGAAT
Found at i:71437 original size:52 final size:52
Alignment explanation
Indices: 71365--71464 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
71355 TTGGGGACAC
71365 AGAAATAGGAAACTAGCCTAGAGTTAGGGGATTACAACTAATTACAAGGCAT
1 AGAAATAGGAAACTAGCCTAGAGTTAGGGGATTACAACTAATTACAAGGCAT
* *
71417 AGAAATAGGAGACTATCCTAGAGTTAGGGGATTACAACTAATTACAAG
1 AGAAATAGGAAACTAGCCTAGAGTTAGGGGATTACAACTAATTACAAG
71465 AATATTATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (52 bp):
AGAAATAGGAAACTAGCCTAGAGTTAGGGGATTACAACTAATTACAAGGCAT
Done.