Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004477.1 Hibiscus syriacus cultivar Beakdansim tig00009869_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60090

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
957--991
16
2.3
15
90
5
52
71
0
5
22
1.07
1133--1171
18
2.2
18
90
0
60
38
5
20
35
1.75
1128--1239
20
5.7
20
70
12
72
33
8
24
33
1.85
1130--1239
40
2.8
39
74
8
89
33
8
24
33
1.85
1232--1341
20
5.5
20
72
21
70
30
14
27
28
1.95
1212--1339
40
3.2
40
73
12
113
32
14
26
27
1.94
1191--1341
80
1.9
80
82
8
191
31
13
26
28
1.94
1324--1381
21
2.8
21
79
7
73
29
12
29
29
1.93
1676--1719
20
2.1
20
87
8
61
40
2
18
38
1.63
3063--3110
22
2.2
21
82
10
53
27
0
27
45
1.54
6836--6888
24
2.3
24
87
6
74
52
0
1
45
1.11
7179--7212
17
2.0
17
100
0
68
70
5
0
23
1.09
7840--7980
39
3.6
39
99
0
273
43
4
9
41
1.59
7831--8176
37
9.6
38
85
12
396
44
4
8
43
1.53
7944--8010
26
2.5
27
87
7
109
43
2
8
44
1.50
8240--8300
11
5.6
11
76
16
56
24
1
0
73
0.92
8192--8279
22
3.8
23
75
14
83
32
0
4
62
1.15
8198--8273
25
3.0
25
81
11
75
32
0
5
61
1.18
8247--8309
18
3.5
17
82
10
72
22
3
0
74
0.96
20259--20283
11
2.3
11
100
0
50
92
0
8
0
0.40
21825--21874
24
2.0
25
88
3
75
48
0
4
48
1.20
21850--22191
37
9.4
37
86
11
453
44
3
8
44
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21877--21944
28
2.4
28
100
0
136
42
4
10
42
1.58
21904--22191
75
3.9
75
89
7
410
43
3
7
44
1.50
22008--22067
11
5.1
11
70
21
50
45
1
8
45
1.43
21918--22191
112
2.5
111
90
7
416
44
3
7
44
1.49
22176--22268
10
8.8
10
75
20
59
33
1
4
61
1.23
22226--22268
13
3.2
13
90
9
61
30
0
0
69
0.88
22226--22268
16
2.6
17
85
14
63
30
0
0
69
0.88
22191--22299
20
5.6
20
74
15
68
27
1
1
68
1.10
22228--22293
30
2.2
30
82
12
75
24
1
0
74
0.91
26177--26263
41
2.1
41
91
0
138
44
19
18
17
1.87
26996--27082
26
3.3
26
100
0
174
33
17
20
28
1.95
30098--30137
18
2.2
18
86
0
53
7
32
12
47
1.69
30113--30157
21
2.1
21
91
0
72
4
31
15
48
1.65
32005--32053
21
2.3
20
80
10
53
59
12
6
22
1.55
32951--32992
23
1.9
22
85
9
59
38
19
9
33
1.84
36858--36901
22
2.0
22
95
4
81
22
4
9
63
1.42
38828--38924
37
2.6
37
80
6
124
41
15
12
30
1.84
39652--39699
23
2.1
23
84
7
62
22
2
8
66
1.29
39705--39740
18
1.9
19
88
5
56
30
5
0
63
1.17
39777--39803
2
13.5
2
100
0
54
48
0
0
51
1.00
39809--39858
12
4.2
12
77
10
57
16
6
0
78
0.95
44413--44459
23
2.0
24
84
12
62
82
8
6
2
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44534--44864
175
2.0
163
88
8
484
35
20
17
26
1.95
45267--45330
21
3.0
22
93
4
112
37
28
14
20
1.91
45266--45334
22
3.2
22
91
4
122
36
26
14
23
1.93
46113--47806
106
16.0
106
89
1
2490
34
24
17
23
1.96
48534--48638
37
2.8
37
85
0
147
39
15
15
30
1.88
49154--49208
22
2.5
22
77
13
60
32
3
0
63
1.12
49403--49440
5
7.8
5
83
16
53
34
2
0
63
1.09
49408--49455
20
2.5
19
83
12
62
31
2
4
62
1.26
49512--49553
16
2.6
16
81
7
50
14
7
0
78
0.95
51510--51551
19
2.4
19
84
11
54
21
26
11
40
1.88

Tables:   1

The End!