genome.fa.s4478.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004478.1 Hibiscus syriacus cultivar Beakdansim tig00009871_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70678

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14884--14910	2	13.5	2	100	0	54	51	0	0	48	1.00
20063--20123	30	2.0	31	87	3	88	50	8	8	32	1.62
20857--20917	31	2.0	31	93	0	104	29	24	21	24	1.99
22758--22884	60	2.1	59	98	1	245	37	14	12	35	1.84
23392--23706	153	2.1	153	93	1	533	35	16	11	36	1.85
24578--24692	55	2.1	56	91	1	187	52	6	3	37	1.46
24859--24917	23	2.5	24	78	10	77	38	1	5	54	1.33
24882--25091	38	5.7	36	80	8	217	41	3	7	47	1.49
25800--25851	20	2.6	19	88	8	77	53	19	17	9	1.70
25886--26239	20	17.4	20	92	3	573	35	15	24	24	1.94
25865--26239	123	3.0	123	93	2	603	36	15	24	24	1.94
25886--26239	163	2.2	163	93	3	606	35	15	24	24	1.94
26353--26386	5	6.6	5	96	3	59	23	55	20	0	1.43
27074--27105	6	5.5	6	96	3	57	0	15	53	31	1.43
27193--27470	20	13.6	20	76	8	193	18	21	19	39	1.92
27195--27366	63	2.8	62	80	7	199	20	23	18	37	1.94
27193--27367	83	2.1	83	89	0	260	21	24	18	36	1.95
27420--27470	19	2.6	20	90	3	77	15	17	23	43	1.88
27777--27810	15	2.3	15	94	0	59	32	32	20	14	1.93
30377--30723	173	2.0	173	100	0	694	26	22	16	34	1.95
34700--34733	15	2.3	15	94	0	59	32	32	20	14	1.93
35259--35415	64	2.5	64	77	12	171	26	18	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37365--37439	18	3.9	18	73	13	69	21	17	30	30	1.96
37359--37439	40	2.0	40	92	0	135	23	17	28	30	1.97
37882--37916	11	3.2	11	87	0	52	28	11	28	31	1.92
39766--39790	2	12.5	2	100	0	50	52	0	0	48	1.00
39970--40000	14	2.2	14	94	0	53	45	22	0	32	1.53
40440--40482	21	2.0	21	86	0	59	39	6	23	30	1.81
40461--40506	15	3.1	15	81	6	67	41	8	19	30	1.82
40851--40913	23	2.7	23	80	5	63	46	1	1	50	1.20
40910--40968	24	2.4	24	83	10	75	52	1	0	45	1.10
40987--41057	26	2.7	27	82	10	76	53	0	1	45	1.09
41006--41041	19	1.9	18	88	5	54	55	0	0	44	0.99
41232--41359	42	3.0	42	94	0	229	47	16	15	20	1.82
53046--53089	23	1.9	23	81	9	54	31	2	6	59	1.36
53387--53411	11	2.3	11	100	0	50	60	0	0	40	0.97
53920--54001	29	2.8	29	92	1	128	32	12	13	41	1.81
55247--55276	15	2.0	15	100	0	60	60	26	0	13	1.34
58641--58722	29	2.8	29	92	1	128	32	12	13	41	1.81
64943--64973	14	2.2	14	94	0	53	54	12	9	22	1.67

Tables:   1

The End!