genome.fa.s4479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004479.1 Hibiscus syriacus cultivar Beakdansim tig00009873_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59634

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1399--1522	31	4.0	31	86	4	169	41	21	16	19	1.90
1399--1522	63	2.0	62	85	4	169	41	21	16	19	1.90
3330--3404	37	2.2	32	78	21	82	48	8	0	44	1.32
3332--3406	34	2.1	37	88	11	113	46	8	0	45	1.32
5413--5458	23	2.0	23	86	0	65	54	6	10	28	1.60
10466--10640	87	2.0	87	100	0	350	40	4	12	43	1.61
10683--10759	3	26.0	3	97	2	147	0	66	0	33	0.92
10745--11074	167	2.0	166	95	0	597	30	24	14	30	1.95
11887--11915	11	2.5	12	94	5	51	27	0	3	68	1.05
15208--15252	20	2.2	20	96	0	81	40	22	15	22	1.91
15375--15445	19	3.7	19	92	0	124	36	15	11	36	1.83
15277--15392	60	1.9	60	92	5	198	43	22	13	20	1.87
15359--15449	38	2.3	38	90	3	146	36	19	12	31	1.89
15225--15469	20	12.4	20	78	8	164	40	21	13	24	1.89
15432--15488	18	3.0	19	82	7	62	33	21	14	31	1.92
16237--16270	12	2.8	12	90	0	50	55	29	0	14	1.40
17005--17068	23	2.8	22	85	4	83	26	26	26	20	1.99
17739--17781	21	2.0	21	86	0	59	18	23	25	32	1.97
23836--23899	23	2.8	23	81	13	87	28	26	25	20	1.99
24570--24612	21	2.0	21	86	0	59	16	25	27	30	1.97
27942--27991	20	2.5	20	80	0	64	42	20	22	16	1.89
28577--28613	18	2.1	18	89	0	56	32	5	10	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28569--28621	24	2.2	24	86	0	70	35	3	13	47	1.61
29531--29568	20	1.9	20	100	0	76	42	23	18	15	1.89
29661--29702	20	2.1	20	100	0	84	14	23	19	42	1.87
29750--29925	66	2.6	65	89	8	257	52	17	2	27	1.56
30011--30093	24	3.5	24	93	1	141	42	32	1	24	1.62
30208--30285	20	3.9	20	88	5	122	19	19	24	37	1.94
30291--30337	20	2.3	20	96	0	85	21	19	25	34	1.96
30208--30338	60	2.2	60	82	10	153	21	18	23	36	1.95
30306--30378	20	3.7	20	71	23	55	24	15	28	31	1.95
42135--42180	2	23.0	2	100	0	92	50	0	0	50	1.00
42736--42806	3	23.3	3	80	13	83	1	32	2	63	1.18
51900--52084	94	2.0	94	91	2	300	29	17	22	30	1.97

Tables:   1

The End!