genome.fa.s448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000448.1 Hibiscus syriacus cultivar Beakdansim tig00000818_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88138

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2237--2297	23	2.7	23	87	7	88	18	26	26	29	1.98
7862--7932	23	3.0	24	79	8	83	23	22	22	30	1.99
11156--11224	21	3.3	21	85	4	95	21	4	21	52	1.64
13558--13600	22	2.0	22	86	9	61	18	13	30	37	1.90
13963--14185	117	1.9	115	88	3	331	27	11	21	39	1.88
25757--25801	16	2.8	16	100	0	90	35	17	26	20	1.95
26374--26446	23	3.2	23	86	3	103	39	20	5	34	1.76
26864--26936	23	3.2	23	86	3	103	39	20	5	34	1.76
25973--27280	490	2.7	490	97	0	2457	39	10	7	41	1.68
31324--31395	3	24.0	3	79	0	81	25	31	4	38	1.75
31325--31412	12	7.3	12	85	0	104	22	31	5	39	1.78
31325--31412	6	14.7	6	83	4	79	22	31	5	39	1.78
32893--34255	200	6.8	200	96	0	2487	30	18	15	35	1.92
34356--34416	19	3.3	18	88	2	59	52	11	1	34	1.47
34368--34416	19	2.6	19	96	0	89	55	10	2	32	1.45
36206--36271	33	2.0	33	90	0	105	22	48	0	28	1.51
36305--36369	21	3.1	21	93	0	103	16	30	10	41	1.83
38594--38636	20	2.3	18	85	14	61	20	16	11	51	1.75
38599--38645	20	2.4	19	82	10	67	19	17	10	53	1.72
38780--38826	20	2.3	20	86	10	69	17	19	10	53	1.72
38566--39038	181	2.6	182	87	1	662	27	17	13	42	1.86
39399--39547	40	3.9	38	80	6	167	45	4	4	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39462--39491	14	2.1	14	93	0	51	46	6	3	43	1.46
39399--39529	40	3.4	38	83	5	174	45	4	4	45	1.44
39399--39547	37	3.9	37	76	13	142	45	4	4	44	1.45
39573--39621	17	2.7	17	84	12	62	16	4	0	79	0.88
39573--39622	12	4.1	13	80	10	52	16	4	0	80	0.87
39588--39621	6	5.8	6	93	6	61	14	0	0	85	0.60
40374--40535	65	2.5	65	86	1	209	32	23	15	29	1.95
48966--49003	20	1.9	20	88	0	58	34	31	15	18	1.92
49031--49103	19	3.8	19	98	0	137	21	34	17	26	1.96
49069--49234	64	2.6	64	84	4	201	30	23	16	29	1.97
55871--55912	22	1.9	22	85	0	57	21	38	26	14	1.91
58970--59475	200	2.5	201	84	0	647	31	19	20	27	1.97
59841--60094	34	6.9	36	81	10	275	46	3	7	41	1.51
60219--60270	6	8.3	6	83	10	61	15	3	0	80	0.85
60219--60270	13	4.2	12	85	12	61	15	3	0	80	0.85
60217--60262	11	4.1	11	77	22	51	17	2	0	80	0.81
60220--60270	17	2.9	19	75	16	56	15	3	0	80	0.86
60267--60301	18	2.0	18	88	5	54	25	31	11	31	1.91
74653--74688	13	2.8	13	95	0	63	41	8	16	33	1.78
76938--77017	21	3.8	21	77	9	72	16	25	35	23	1.95
76959--77019	20	2.9	20	82	7	68	18	26	32	22	1.97
80786--80825	21	1.9	21	85	10	55	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86338--86399	32	1.9	32	96	0	115	41	8	0	50	1.32
86335--86431	40	2.4	40	77	1	122	39	6	0	54	1.25

Tables:   1

The End!