Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004480.1 Hibiscus syriacus cultivar Beakdansim tig00009874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66572

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8893--8922
2
15.0
2
100
0
60
50
0
0
50
1.00
15093--15119
12
2.2
12
100
0
54
55
0
7
37
1.28
15373--15415
17
2.6
17
85
3
61
79
0
11
9
0.95
16460--16526
12
5.2
13
78
12
50
74
0
5
19
1.02
16456--16500
14
3.1
14
78
6
54
73
0
13
13
1.10
16567--16686
63
1.9
62
87
1
177
47
5
3
43
1.44
16635--16923
38
8.1
36
73
20
184
44
6
2
45
1.45
16627--16924
39
8.3
38
72
20
209
44
7
2
45
1.45
16640--16919
76
3.9
74
78
15
263
43
6
2
46
1.44
16742--16766
13
1.9
13
100
0
50
40
8
4
48
1.51
16717--16852
64
2.1
63
95
1
245
44
8
1
45
1.42
16755--16814
25
2.4
25
91
2
93
46
6
0
46
1.29
16686--16878
102
1.9
99
90
5
307
45
7
2
45
1.43
16781--16919
73
1.9
74
85
13
196
42
7
2
47
1.44
16781--16931
71
2.1
74
83
13
188
42
8
2
46
1.48
16779--16979
111
1.8
110
81
12
252
42
7
2
47
1.45
22828--22856
6
4.8
6
100
0
58
17
34
17
31
1.93
29762--29810
17
2.7
18
76
23
57
69
2
0
28
1.00
36667--36711
21
2.1
21
95
0
81
40
11
20
28
1.86
37870--37903
18
1.9
18
88
5
52
38
11
11
38
1.79
38346--38402
21
2.7
21
97
0
105
26
26
28
19
1.99
38598--38652
13
4.2
13
75
13
58
49
12
3
34
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38638--38736
33
3.0
33
92
1
155
45
15
6
33
1.70
38731--38772
21
2.0
21
95
0
75
47
7
14
30
1.71
55251--55279
2
14.5
2
100
0
58
48
0
0
51
1.00
58908--58981
37
2.0
37
97
0
139
45
27
4
22
1.70
61907--61979
30
2.4
30
100
0
146
13
30
27
28
1.94
61911--61961
16
3.3
16
69
20
54
11
29
27
31
1.92

Tables:   1

The End!