genome.fa.s4481.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004481.1 Hibiscus syriacus cultivar Beakdansim tig00009876_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64274

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5038--5098	2	30.5	2	96	0	113	47	0	1	50	1.10
5549--5600	18	2.9	18	82	0	68	30	32	19	17	1.95
5581--5635	28	2.0	28	92	0	92	41	25	18	14	1.88
9831--9882	18	2.9	18	97	0	95	26	36	23	13	1.92
10779--10815	11	3.6	11	79	20	53	21	18	32	27	1.97
10768--10823	19	2.9	19	97	2	103	21	21	30	26	1.98
10773--10838	8	7.2	8	73	23	51	24	21	27	27	1.99
13572--13649	21	3.5	22	78	8	86	25	23	25	25	2.00
19411--19457	19	2.6	17	86	10	58	31	19	23	25	1.98
19409--19588	65	2.8	63	81	9	204	29	16	22	31	1.96
19429--19588	65	2.5	65	85	7	211	29	16	21	33	1.95
24717--24775	29	2.2	25	73	21	66	35	10	3	50	1.53
24691--24918	122	1.9	123	85	3	318	39	9	0	50	1.40
24667--24969	30	10.3	29	78	9	267	40	7	0	51	1.36
24892--24943	24	2.2	24	92	0	86	42	9	0	48	1.36
24867--24969	53	1.9	54	84	2	136	40	7	0	51	1.31
24990--25094	30	3.5	30	73	12	90	50	0	8	40	1.39
25058--25129	25	2.8	27	78	16	82	52	1	8	37	1.40
26884--26923	8	5.5	8	77	22	52	15	40	25	20	1.90
26882--26910	13	2.2	13	100	0	58	13	48	24	13	1.79
28230--28270	18	2.3	18	86	0	55	53	2	17	26	1.56
29421--29488	23	2.9	24	82	4	84	26	14	20	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29394--29488	47	2.0	48	81	2	111	25	14	18	41	1.89
29405--29488	24	3.5	24	78	3	80	26	14	20	39	1.90
31607--31646	8	5.5	8	77	22	52	15	40	25	20	1.90
31605--31633	13	2.2	13	100	0	58	13	48	24	13	1.79
32950--32990	18	2.3	18	86	0	55	53	2	17	26	1.56
34140--34207	23	2.9	24	82	4	84	26	14	20	38	1.91
34113--34207	47	2.0	48	81	2	111	25	14	18	41	1.89
34124--34207	24	3.5	24	78	3	80	26	14	20	39	1.90
37744--37773	15	2.0	15	100	0	60	60	0	20	20	1.37
37747--37781	15	2.3	15	90	0	52	65	0	17	17	1.27
37864--37919	13	4.3	13	75	4	51	78	1	5	14	1.00
37905--37975	31	2.3	30	81	15	76	73	0	4	22	1.01
37864--37973	49	2.3	48	83	12	136	75	0	5	18	1.04
37918--37981	32	2.0	32	85	11	87	70	0	4	25	1.06
37861--37967	9	11.0	9	71	16	63	76	0	4	17	1.01
37905--37985	30	2.7	30	80	16	80	71	0	3	24	1.02
37905--38045	38	3.6	38	78	17	121	68	1	2	26	1.11
38041--38101	23	2.8	21	74	16	54	67	4	6	21	1.33
38421--38489	34	2.0	34	91	0	111	31	13	11	43	1.79
38951--39844	105	8.5	104	79	8	861	22	19	25	32	1.97
38951--39835	206	4.2	206	79	8	748	21	20	25	32	1.97
40300--40369	36	1.9	36	82	0	86	38	8	22	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40343--40570	103	2.2	103	80	4	248	40	13	20	25	1.88
40473--40642	65	2.6	65	93	0	297	37	12	18	31	1.88
40442--40759	167	1.9	169	91	1	523	37	11	20	30	1.88
40542--41274	102	7.2	102	96	0	1323	37	13	19	29	1.90
41223--41292	15	4.5	15	76	13	70	38	17	25	18	1.92
42167--42217	22	2.3	22	96	0	93	25	11	27	35	1.91
45840--45868	14	2.0	15	93	6	51	58	0	20	20	1.39
45883--45944	31	2.1	29	85	11	81	70	3	8	17	1.25
46010--46142	38	3.5	39	78	16	127	67	1	2	28	1.11
46006--46126	42	3.0	40	78	17	117	66	0	2	29	1.10
46010--46142	37	3.5	37	77	14	119	67	1	2	28	1.11
46513--46579	34	2.0	34	91	5	111	31	14	11	41	1.83
47772--47820	22	2.2	22	88	3	71	83	2	6	8	0.87
47766--47821	23	2.5	22	82	8	67	83	1	5	8	0.85
47766--47828	10	6.0	10	78	9	54	82	1	7	7	0.90
52671--52726	20	2.8	20	81	2	69	28	23	16	32	1.96
57232--57349	29	4.1	29	85	5	143	37	14	17	30	1.90
57254--57349	27	3.4	28	86	4	122	40	14	16	28	1.88
57232--57349	56	2.1	58	87	7	170	37	14	17	30	1.90
58402--58446	18	2.5	18	100	0	90	24	22	6	46	1.75
60614--60649	15	2.3	16	90	4	56	44	2	8	44	1.48
60694--60793	20	5.3	20	72	12	86	42	3	11	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60720--60795	35	2.2	35	80	4	91	39	3	13	43	1.62

Tables:   1

The End!