genome.fa.s4482.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004482.1 Hibiscus syriacus cultivar Beakdansim tig00009877_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71844

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2794--2824	2	15.5	2	100	0	62	48	0	0	51	1.00
26937--26962	2	13.0	2	100	0	52	0	50	0	50	1.00
34446--34492	12	3.9	12	75	10	51	46	0	2	51	1.13
34446--34491	24	2.0	24	91	4	76	47	0	2	50	1.13
38724--38748	10	2.5	10	100	0	50	36	20	0	44	1.52
38796--38836	18	2.3	18	91	4	66	29	4	2	63	1.28
44054--44109	28	2.0	28	86	6	78	42	1	3	51	1.29
44061--44119	29	2.0	30	83	9	77	40	0	1	57	1.09
47644--47759	38	3.1	38	96	0	205	13	25	28	32	1.94
47688--47749	20	3.2	20	65	17	58	14	25	24	35	1.93
49280--49346	31	2.2	31	94	0	116	23	7	14	53	1.66
49290--49356	31	2.2	31	88	0	98	23	10	13	52	1.71
50935--50982	19	2.5	19	93	0	78	37	4	20	37	1.72
50950--50991	19	2.2	19	91	0	66	33	4	26	35	1.77
51004--51040	19	1.9	19	94	0	65	37	8	29	24	1.84
51382--51499	41	2.9	41	94	0	209	19	16	26	38	1.92
51383--51497	20	5.7	20	73	11	108	20	16	26	36	1.93
51525--51656	40	3.3	40	72	8	151	25	18	27	28	1.98
51485--51660	80	2.2	80	96	0	325	27	18	23	30	1.97
51551--51676	20	6.3	20	69	11	62	24	18	26	30	1.98
51642--51678	19	1.9	19	94	0	65	21	16	29	32	1.95
51855--51883	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57908--58040	42	3.2	42	95	0	239	38	18	14	28	1.90
71347--71530	94	2.0	93	90	3	289	30	22	17	29	1.97

Tables:   1

The End!