genome.fa.s4483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004483.1 Hibiscus syriacus cultivar Beakdansim tig00009878_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95792

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267--329	24	2.7	23	78	7	63	9	31	33	25	1.88
2316--2365	22	2.3	21	82	3	55	48	12	2	38	1.52
10412--10450	19	2.0	20	85	14	55	41	5	25	28	1.77
16137--16182	23	2.0	24	86	4	67	8	17	17	56	1.65
19099--19182	42	2.0	44	85	4	118	30	14	13	41	1.84
20468--20629	30	5.5	30	70	13	102	57	12	14	15	1.66
23597--24250	322	2.0	322	91	5	1073	38	17	14	29	1.89
29610--29688	38	2.1	38	87	0	113	17	26	27	27	1.98
31064--31106	21	2.0	21	95	0	77	0	16	53	30	1.43
34068--34102	13	2.8	13	91	4	54	57	0	0	42	0.99
37085--37125	8	5.2	8	82	5	57	34	0	29	36	1.58
37193--37799	126	4.8	126	97	0	1142	22	25	19	32	1.97
37841--37913	32	2.2	32	83	7	85	49	2	13	34	1.57
38177--38234	27	2.2	27	84	9	75	43	3	5	48	1.42
38212--38275	34	1.9	34	90	3	103	34	1	4	59	1.28
38800--38883	21	4.0	21	90	6	125	20	23	36	19	1.95
40654--40735	31	2.5	31	80	5	92	58	2	0	39	1.11
40650--40755	34	3.2	34	81	11	96	61	3	0	34	1.14
43979--44019	7	5.9	7	94	5	66	29	0	53	17	1.44
45372--45458	31	2.8	30	81	10	95	54	3	1	41	1.25
45367--45434	19	3.5	20	73	15	54	54	1	2	41	1.24
46626--46670	13	3.5	13	82	11	65	48	11	6	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46953--47123	91	1.9	90	87	3	254	38	9	8	44	1.67
49786--49861	36	2.1	36	90	0	116	38	3	14	43	1.64
57472--57533	29	2.2	29	91	2	99	17	19	11	51	1.75
57561--57921	44	8.3	43	75	10	247	25	19	7	48	1.74
57518--57931	132	3.2	129	78	8	405	25	17	6	50	1.70
59086--59130	2	22.5	2	100	0	90	48	0	0	51	1.00
63767--63877	57	1.9	57	92	0	186	41	9	17	32	1.80
64220--64257	19	2.0	19	85	10	51	18	18	15	47	1.83
66305--66369	29	2.2	29	83	0	76	27	6	18	47	1.72
74390--74540	75	2.0	75	98	0	293	50	5	2	41	1.39
74395--74509	35	3.1	35	62	24	83	51	6	3	38	1.46
77099--77137	21	1.9	20	85	15	53	56	5	15	23	1.59
77371--77764	211	1.9	211	84	2	531	36	13	15	34	1.87
84699--84985	13	19.8	14	65	20	85	57	0	2	38	1.18
84702--84818	16	7.9	16	66	22	60	60	0	1	36	1.13
84744--84942	30	7.5	26	68	15	106	58	1	2	37	1.18
84866--84956	16	5.9	15	76	17	71	61	1	1	36	1.10
84859--84932	18	4.4	18	77	16	63	62	1	0	36	1.04
84690--85151	161	2.9	154	87	7	646	56	1	3	38	1.24
95495--95519	13	1.9	13	100	0	50	16	48	16	20	1.82

Tables:   1

The End!