Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004484.1 Hibiscus syriacus cultivar Beakdansim tig00009879_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66775
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:4447 original size:29 final size:29
Alignment explanation
Indices: 4385--4466 Score: 121
Period size: 29 Copynumber: 2.8 Consensus size: 29
4375 CAAACTAAAT
*
4385 TGATGTCATTGCTTATATCA-TTAAGTAA
1 TGATGTCATTGCTTACATCATTTAAGTAA
*
4413 AGATGTCATTGCTTACATCATTTAAGTAA
1 TGATGTCATTGCTTACATCATTTAAGTAA
*
4442 TGATGTTATTGCTTACATCAATTTA
1 TGATGTCATTGCTTACATC-ATTTA
4467 GTTAGGTGAG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.38
29 25 0.52
30 5 0.10
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.43
Consensus pattern (29 bp):
TGATGTCATTGCTTACATCATTTAAGTAA
Found at i:4877 original size:12 final size:13
Alignment explanation
Indices: 4847--4879 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
4837 GCCAGAAAAT
4847 CGAGTTGACTCAC
1 CGAGTTGACTCAC
4860 CGAGTTGACTCA-
1 CGAGTTGACTCAC
4872 CGAGTTGA
1 CGAGTTGA
4880 GCCGAGTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (13 bp):
CGAGTTGACTCAC
Found at i:9136 original size:29 final size:29
Alignment explanation
Indices: 9094--9175 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
9084 AAACTAAATT
9094 GATGTCATTGCTTACATCATTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
9123 GATGTCATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
9152 GATGTTATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
9176 GTTAGGTGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
29 45 0.90
30 5 0.10
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.41
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:14963 original size:16 final size:14
Alignment explanation
Indices: 14942--14980 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
14932 CTATTAAATG
14942 TAACGGTTATACCGGT
1 TAACGGTT-TA-CGGT
14958 TAACGG-TTACGGT
1 TAACGGTTTACGGT
14971 TAACGGTTTA
1 TAACGGTTTA
14981 ATATTAACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 5 0.23
15 1 0.05
16 6 0.27
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (14 bp):
TAACGGTTTACGGT
Found at i:15373 original size:14 final size:14
Alignment explanation
Indices: 15354--15384 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
15344 ATTGATAGAT
15354 AATGACAATAACTA
1 AATGACAATAACTA
*
15368 AATGACAATGACTA
1 AATGACAATAACTA
15382 AAT
1 AAT
15385 TTATATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.13, G:0.10, T:0.23
Consensus pattern (14 bp):
AATGACAATAACTA
Found at i:22477 original size:22 final size:23
Alignment explanation
Indices: 22439--22483 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
22429 TTGTATTATT
*
22439 TTTTATTCATTCGAAAAT-AATA
1 TTTTATTCATTCAAAAATGAATA
*
22461 TTTTATTCATTTAAAAATGAATA
1 TTTTATTCATTCAAAAATGAATA
22484 AATTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.47
Consensus pattern (23 bp):
TTTTATTCATTCAAAAATGAATA
Found at i:22489 original size:23 final size:22
Alignment explanation
Indices: 22441--22494 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
22431 GTATTATTTT
** **
22441 TTATTCATTCGAAAATAATATT
1 TTATTCATTTAAAAATAATAAA
22463 TTATTCATTTAAAAATGAATAAA
1 TTATTCATTTAAAAAT-AATAAA
22486 TTATT-ATTT
1 TTATTCATTT
22495 GTATTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.48
Consensus pattern (22 bp):
TTATTCATTTAAAAATAATAAA
Found at i:23306 original size:32 final size:33
Alignment explanation
Indices: 23281--23361 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
23271 TACCTTTTTA
23281 TGAGGCAC-CAAAGTCATATTACTACCTCTCTT
1 TGAGGCACACAAAGTCATATTACTACCTCTCTT
*
23313 TGAGGCACACAAATTCATAGATT--TACCTCTCTT
1 TGAGGCACACAAAGTCAT--ATTACTACCTCTCTT
*
23346 TGAGGCA-ATAAAGTCA
1 TGAGGCACACAAAGTCA
23362 CACCCTCATA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
32 15 0.35
33 25 0.58
35 3 0.07
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (33 bp):
TGAGGCACACAAAGTCATATTACTACCTCTCTT
Found at i:23621 original size:2 final size:2
Alignment explanation
Indices: 23614--23652 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
23604 TTTTAACCGT
23614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23653 TACATTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:34224 original size:21 final size:21
Alignment explanation
Indices: 34198--34242 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
34188 GTTTTAGAAA
34198 AAAATTAAAAATTTAGGTACT
1 AAAATTAAAAATTTAGGTACT
* * *
34219 AAAATTGATACTTTAGGTACT
1 AAAATTAAAAATTTAGGTACT
34240 AAA
1 AAA
34243 CACATTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (21 bp):
AAAATTAAAAATTTAGGTACT
Found at i:36125 original size:2 final size:2
Alignment explanation
Indices: 36118--36191 Score: 148
Period size: 2 Copynumber: 37.0 Consensus size: 2
36108 TAAAGTATTC
36118 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36192 TAATTGTTGC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38443 original size:23 final size:23
Alignment explanation
Indices: 38408--38453 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
38398 TAATATGTTG
*
38408 AAAGTATCTATACTTTTTTATAAA
1 AAAGTATCGATACTTTTTT-TAAA
38432 AAAG-ATCGATACTTTTTTTAAA
1 AAAGTATCGATACTTTTTTTAAA
38454 GTTATGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 13 0.62
24 4 0.19
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (23 bp):
AAAGTATCGATACTTTTTTTAAA
Found at i:38838 original size:23 final size:23
Alignment explanation
Indices: 38803--38875 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
38793 ATACTTTACA
* *
38803 ATATAAGCACTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
38826 ATATAAACGCTACCTATTACATT
1 ATATAAACGCTACCTATTACATT
* *
38849 ATATTAACGCTACCTATTACATC
1 ATATAAACGCTACCTATTACATT
38872 ATAT
1 ATAT
38876 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (23 bp):
ATATAAACGCTACCTATTACATT
Found at i:38876 original size:23 final size:23
Alignment explanation
Indices: 38812--38876 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
38802 AATATAAGCA
*
38812 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATTAACG
38835 CTACCTATTACATTATATTAACG
1 CTACCTATTACATTATATTAACG
*
38858 CTACCTATTACATCATATT
1 CTACCTATTACATTATATT
38877 TTTACCTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (23 bp):
CTACCTATTACATTATATTAACG
Found at i:39328 original size:23 final size:23
Alignment explanation
Indices: 39293--39365 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
39283 ATACTTTACA
*
39293 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
39316 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
39339 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
39362 ATAT
1 ATAT
39366 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:39593 original size:489 final size:489
Alignment explanation
Indices: 38405--39711 Score: 2482
Period size: 490 Copynumber: 2.7 Consensus size: 489
38395 TTATAATATG
* *
38405 TTGAAAGTATCTATACTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
38470 TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
38534 -AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
*
38598 TAACTAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAAT-A-ATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
38661 ATCGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
38725 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
38790 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTA
38855 ACGCTACCTATTACATCATATTTTTACCTATTATA
455 ACGCTACCTATTACATCATATTTTTACCTATTATA
*
38890 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTTAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
38955 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
39020 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
39085 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
39150 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ATCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
39215 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
325 CAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
39280 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATA-TA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTA
39344 AGCGCTACCTATTACATCATATTTTTACCTATTATA
455 A-CGCTACCTATTACATCATATTTTTACCTATTATA
39380 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
39445 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
66 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
39510 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
131 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
*
39575 AACCAAAGATAATAATAAATATGTAATATATATGTTTTTTGTTTTTAATTTAATAATAATATATA
196 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
*
39640 CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
261 TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
39705 AAAAGAT
326 AAAAGAT
39712 GTACATACCT
Statistics
Matches: 807, Mismatches: 8, Indels: 10
0.98 0.01 0.01
Matches are distributed among these distances:
484 51 0.06
485 15 0.02
486 59 0.07
487 121 0.15
488 1 0.00
489 278 0.34
490 282 0.35
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (489 bp):
TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
TCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTAA
CGCTACCTATTACATCATATTTTTACCTATTATA
Found at i:42416 original size:183 final size:183
Alignment explanation
Indices: 42103--43287 Score: 2162
Period size: 183 Copynumber: 6.5 Consensus size: 183
42093 TTTTTCGAAA
* *
42103 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATATTTCTTCCAATCTGGACATAAAGTT
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
*
42168 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGCTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
42233 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
42286 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
*
42351 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCACTCATAAAACCGGTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
42416 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
42469 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
42534 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
*
42599 TATACCAGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
42652 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
42717 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
*
42782 TATACCGGTTATAATACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
*
42835 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTT
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
42900 CCGACACAATATT-AAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
42964 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
* *
43017 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATCTTTCTTCCAATCTGGACATAAAGTT
1 GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
43082 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
66 CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
* *
43147 TATATCGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGAT
131 TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
* * * *
43200 GTTTTTTCAA--TCGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCATTCTGGACATAA
1 G---TGTAAATGTCGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAA
*
43262 AGTACAGACACAATATTAAAAAGTGT
62 AGTACCGACACAATATTAAAAAGTGT
43288 GAAAACTTTG
Statistics
Matches: 977, Mismatches: 20, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
182 180 0.18
183 724 0.74
184 69 0.07
186 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (183 bp):
GTGTAAATGTCGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAGTA
CCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATATT
TATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGAT
Found at i:44503 original size:3 final size:3
Alignment explanation
Indices: 44495--44569 Score: 69
Period size: 3 Copynumber: 25.0 Consensus size: 3
44485 ACTTGTTTGG
* * * * * *
44495 ATC ATC ATC ATC ATC ATC ATC GTC GTC ATC ATC TTC ATC GTC AGC TTC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * *
44543 ATC GTC ATC ATC ATC GTC ATC TTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC
44570 GTCAGCTTCA
Statistics
Matches: 56, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.23, C:0.33, G:0.08, T:0.36
Consensus pattern (3 bp):
ATC
Found at i:44512 original size:12 final size:12
Alignment explanation
Indices: 44495--44586 Score: 85
Period size: 12 Copynumber: 7.7 Consensus size: 12
44485 ACTTGTTTGG
*
44495 ATCATCATCATC
1 ATCATCATCTTC
*
44507 ATCATCATCGTC
1 ATCATCATCTTC
*
44519 GTCATCATCTTC
1 ATCATCATCTTC
* *
44531 ATCGTCAGCTTC
1 ATCATCATCTTC
* *
44543 ATCGTCATCATC
1 ATCATCATCTTC
*
44555 ATCGTCATCTTC
1 ATCATCATCTTC
* *
44567 ATCGTCAGCTTC
1 ATCATCATCTTC
*
44579 ATCTTCAT
1 ATCATCAT
44587 TGACCGCTTG
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 68 1.00
ACGTcount: A:0.22, C:0.33, G:0.09, T:0.37
Consensus pattern (12 bp):
ATCATCATCTTC
Found at i:44580 original size:18 final size:18
Alignment explanation
Indices: 44505--44586 Score: 94
Period size: 18 Copynumber: 4.6 Consensus size: 18
44495 ATCATCATCA
* *
44505 TCATCATCATCGTC-GTCA
1 TCATCTTCATCGTCAG-CT
44523 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGTCAGCT
* * * *
44541 TCATCGTCATCATCATCG
1 TCATCTTCATCGTCAGCT
44559 TCATCTTCATCGTCAGCT
1 TCATCTTCATCGTCAGCT
44577 TCATCTTCAT
1 TCATCTTCAT
44587 TGACCGCTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
18 52 0.98
19 1 0.02
ACGTcount: A:0.20, C:0.33, G:0.10, T:0.38
Consensus pattern (18 bp):
TCATCTTCATCGTCAGCT
Found at i:46414 original size:200 final size:200
Alignment explanation
Indices: 46088--47020 Score: 1661
Period size: 200 Copynumber: 4.7 Consensus size: 200
46078 TTATATACCA
*
46088 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * * *
46153 TTGGTTTTCAATGTTTATGGGATCGACACTTTTTATATATGGATCAACACTTTATGGTTGCAGCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
46218 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
*
46283 GACCT
196 GACAT
* * *
46288 ATTATCTCATAAAATCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * *
46353 TTGGTTTTCGATGTTTTTGGGATCGATACTTTTTATATATGGATTGACACTTTACGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
* * *
46418 TGTTTGCCATTAATTCTGGACTAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
46483 GACAT
196 GACAT
46488 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
46553 TTGGTTTTCGATGTTTTTGGGATCGACAC-TTTTATATATGGATCGACACTTTATGGTTGTACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
**
46617 TGTTGACCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
46682 GACAT
196 GACAT
46687 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
46752 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
*
46817 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATTATTTA
131 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
46882 GACAT
196 GACAT
*
46887 ATTCTCTCATAAAACCAGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* *
46952 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCA
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
47017 TGTT
131 TGTT
47021 GGCCATATTG
Statistics
Matches: 699, Mismatches: 33, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
199 192 0.27
200 507 0.73
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
GACAT
Found at i:46803 original size:399 final size:400
Alignment explanation
Indices: 46088--47026 Score: 1664
Period size: 399 Copynumber: 2.4 Consensus size: 400
46078 TTATATACCA
*
46088 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTGTACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* * * *
46153 TTGGTTTTCAATGTTTATGGGATCGACACTTTTTATATATGGATCAACACTTTATGGTTGCAGCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
**
46218 TGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTGACCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
* *
46283 GACCTATTATCTCATAAAATCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTA
196 GACATATTATCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTA
* *
46348 TACTTTTGGTTTTCGATGTTTTTGGGATCGATACTTTTTATATATGGATTGACACTTTACGGTTG
261 TACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTACGGTTG
* *
46413 CACCCTGTTTGCCATTAATTCTGGACTAAAAATATCGACACAAACTAAAAAAGTGTCGACACATT
326 CACCCTGTTTGCCATTAATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATT
46478 ATTTAGACAT
391 ATTTAGACAT
46488 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
*
46553 TTGGTTTTCGATGTTTTTGGGATCGACAC-TTTTATATATGGATCGACACTTTATGGTTGTACCC
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
46617 TGTTGACCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
131 TGTTGACCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
* *
46682 GACATATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTA
196 GACATATTATCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTA
*
46747 TACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTG
261 TACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTACGGTTG
* *
46812 CACCCTGTTTTCCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATT
326 CACCCTGTTTGCCATTAATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATT
46877 ATTTAGACAT
391 ATTTAGACAT
*
46887 ATTCTCTCATAAAACCAGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
1 ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
* *
46952 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGTTCGACACTTTATGGTTGCACCA
66 TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
*
47017 TGTTGGCCAT
131 TGTTGACCAT
47027 ATTGTAAATT
Statistics
Matches: 514, Mismatches: 24, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
399 382 0.74
400 132 0.26
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (400 bp):
ATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTT
TTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCC
TGTTGACCATTCATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACACATTATTTA
GACATATTATCTCATAAAACCGGTATAATTGTACCGGTTAGATTGAAAAATTACATATTACATTA
TACTTTTGGTTTTCGATGTTTTTGGGATCGACACTTTTTATATATGGATCGACACTTTACGGTTG
CACCCTGTTTGCCATTAATTCTGGACCAAAAATATCGACACAAACTAAAAAAGTGTCGACAAATT
ATTTAGACAT
Found at i:47161 original size:19 final size:19
Alignment explanation
Indices: 47137--47185 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
47127 AATATATCAC
47137 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
47156 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
47175 ATACAAAATTA
1 ATACAAAATTA
47186 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:49018 original size:32 final size:32
Alignment explanation
Indices: 48976--49036 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
48966 TTAATATCAC
*
48976 CCCTTAACACCCCAACTTCTTTCACCACTTCA
1 CCCTCAACACCCCAACTTCTTTCACCACTTCA
* *
49008 CCCTCAACACCTCTACTTCTTTCACCACT
1 CCCTCAACACCCCAACTTCTTTCACCACT
49037 CCATCTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.30
Consensus pattern (32 bp):
CCCTCAACACCCCAACTTCTTTCACCACTTCA
Found at i:49094 original size:21 final size:21
Alignment explanation
Indices: 49069--49133 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
49059 CCCCTTATGC
* *
49069 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
49090 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
49111 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
49132 CT
1 CT
49134 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:51384 original size:20 final size:20
Alignment explanation
Indices: 51342--51389 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
51332 CATTTTACCG
*
51342 GTTTTATCATTTTGATACCT
1 GTTTTATCATTTTGATACAT
*
51362 GTTTTATCATATTT-TTACAT
1 GTTTTATCAT-TTTGATACAT
*
51382 GTTATATC
1 GTTTTATC
51390 GTTGTGGATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.56
Consensus pattern (20 bp):
GTTTTATCATTTTGATACAT
Found at i:51542 original size:20 final size:20
Alignment explanation
Indices: 51515--51561 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
51505 TTCGGTAACG
51515 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
51534 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
51555 TTTTACC
1 TTTTACC
51562 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:51614 original size:181 final size:180
Alignment explanation
Indices: 51301--51772 Score: 658
Period size: 181 Copynumber: 2.6 Consensus size: 180
51291 CGTACTTACG
* * * * *
51301 AAAGTAGCGACACTTTCAATATATCCTGTATCATTTTACCGGTTTTATCATTTTGATACCTGTTT
1 AAAGTACCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
51366 TATCATATTTTTACATGTTATATCGTTGTGGATCGATATATTTTTTTAAAATATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACA-TTTTTTAAAATATCGACACATTAT
*
51431 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
130 AGG-ACTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * *
51482 AAAGTATCGACACTTTCAATATATTCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTACCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
51547 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAA-TATCGACACATTAT
* **
51612 AGGATTAAAACTGCTTCTCTTTTAAATTCATGAAGTGTCGATCCTTATATT
130 AGGACTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * ** **
51663 AAAGTACCGACACTTTAAATGTATCCGGTAGCGCTTTACCGGTTTTATCATTTCAATATTGGTTT
1 AAAGTACCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* * *
51728 TGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
51773 AATTTGGATC
Statistics
Matches: 258, Mismatches: 31, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
180 52 0.20
181 206 0.80
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (180 bp):
AAAGTACCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAATATCGACACATTATA
GGACTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:52293 original size:30 final size:30
Alignment explanation
Indices: 52253--52319 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
52243 TAAGTGCTTT
*
52253 AAGT-TTTTTTT-AGTTAAAATAGGTACCTA
1 AAGTATTTTTTTGA-TTAAAATAGATACCTA
52282 AAGTATTTTTTTGATTAAAATAGATACCTA
1 AAGTATTTTTTTGATTAAAATAGATACCTA
*
52312 AAGCATTT
1 AAGTATTT
52320 AATATTTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 29 0.85
31 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.43
Consensus pattern (30 bp):
AAGTATTTTTTTGATTAAAATAGATACCTA
Found at i:57441 original size:21 final size:20
Alignment explanation
Indices: 57417--57482 Score: 60
Period size: 21 Copynumber: 3.2 Consensus size: 20
57407 GCAAATTCGC
57417 GTTGCATTTCGCGTTGCGAT
1 GTTGCATTTCGCGTTGCGAT
* ** *
57437 AGTTGAAAATCGCGTTGCTAT
1 -GTTGCATTTCGCGTTGCGAT
* *
57458 TTTCCATTTCGCGTTGCGATT
1 GTTGCATTTCGCGTTGCGA-T
57479 GTTG
1 GTTG
57483 AAAATCACGT
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 13 0.41
21 19 0.59
ACGTcount: A:0.15, C:0.18, G:0.26, T:0.41
Consensus pattern (20 bp):
GTTGCATTTCGCGTTGCGAT
Found at i:58105 original size:6 final size:6
Alignment explanation
Indices: 58096--58122 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
58086 GTCCGTCTCG
58096 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
58123 AATACGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:58263 original size:20 final size:21
Alignment explanation
Indices: 58220--58269 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
58210 CAACGAATTT
*
58220 TCGCAACGAATTTTAAAAATA
1 TCGCAACGAATTTGAAAAATA
58241 TCGCAACGAATTTGAAAAA-A
1 TCGCAACGAATTTGAAAAATA
58261 TCGCAACGA
1 TCGCAACGA
58270 CAACTGTAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (21 bp):
TCGCAACGAATTTGAAAAATA
Found at i:63995 original size:23 final size:23
Alignment explanation
Indices: 63964--64009 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
63954 AAAAAAAGTA
63964 TCACAAAGACAG-AGATAAACGTG
1 TCACAAAGACAGCA-ATAAACGTG
*
63987 TCACGAAGACAGCAATAAACGTG
1 TCACAAAGACAGCAATAAACGTG
64010 CAACACAGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.95
24 1 0.05
ACGTcount: A:0.46, C:0.20, G:0.22, T:0.13
Consensus pattern (23 bp):
TCACAAAGACAGCAATAAACGTG
Done.