Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004485.1 Hibiscus syriacus cultivar Beakdansim tig00009884_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129693
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:912 original size:28 final size:29
Alignment explanation
Indices: 875--945 Score: 74
Period size: 28 Copynumber: 2.4 Consensus size: 29
865 GAAAAAGTTT
* * *
875 AAATAGTTTAGATGCATATTTTGAC-ATA
1 AAATACTTTAGATGCATATTTTAACTAAA
*
903 AAATACTTTA-AGTGCCTATTTTAACTAAA
1 AAATACTTTAGA-TGCATATTTTAACTAAA
932 AAATAACTTTAGAT
1 AAAT-ACTTTAGAT
946 ACTTATTGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 1 0.03
28 20 0.57
29 6 0.17
30 7 0.20
31 1 0.03
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (29 bp):
AAATACTTTAGATGCATATTTTAACTAAA
Found at i:3157 original size:88 final size:91
Alignment explanation
Indices: 2994--3174 Score: 305
Period size: 88 Copynumber: 2.0 Consensus size: 91
2984 TTGAATTCTT
2994 ATCCATGTTAGTGTATGTATTAGGATATAGATGTGTAATTTCAATTTTTTTTTAAGTCTTTTCAT
1 ATCCATGTTAGTGTATGTATTAGGATATAGATGTGTAATTTCAA-TTTTTTTTAAGTCTTTTCAT
*
3059 ATATTTGGAGGGTCATGCCCATGCCCC
65 ATATTTGGAGGGTCATGCACATGCCCC
*
3086 ATCCATGTTAGTGTA-GTGTTAGGATATAGATGTGTAATTTC-A-TTTTTTTAAGTCTTTTCATA
1 ATCCATGTTAGTGTATGTATTAGGATATAGATGTGTAATTTCAATTTTTTTTAAGTCTTTTCATA
*
3148 TATTTGGAGGGTCATGTACATGCCCC
66 TATTTGGAGGGTCATGCACATGCCCC
3174 A
1 A
3175 GTCTTGTCCG
Statistics
Matches: 86, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
88 45 0.52
90 1 0.01
91 25 0.29
92 15 0.17
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.43
Consensus pattern (91 bp):
ATCCATGTTAGTGTATGTATTAGGATATAGATGTGTAATTTCAATTTTTTTTAAGTCTTTTCATA
TATTTGGAGGGTCATGCACATGCCCC
Found at i:17410 original size:96 final size:93
Alignment explanation
Indices: 17229--17412 Score: 260
Period size: 93 Copynumber: 1.9 Consensus size: 93
17219 CTGTGGCTGC
* * * * * *
17229 TGAGCAGGAGGCATGGGGAATTGTTGACTTGGAGTCTCCTGTGTTTGGGCAGGTGGGTAGTAAGC
1 TGAGCAGGAGGCATCGGGAATTGCTGACTTGAAGTCTCCTGAGGTTGGCCAGGTGGGTAGTAAGC
17294 ATCTCGCTGAGGGACAGAAGGAACTTGA
66 ATCTCGCTGAGGGACAGAAGGAACTTGA
* *
17322 TGAGTAGGAGGCATCGGGAATTGCTGTCTTGAAGTCTCCTGAGGTTGGCCAGGTGGTGGATAGTA
1 TGAGCAGGAGGCATCGGGAATTGCTGACTTGAAGTCTCCTGAGGTTGGCCAGGT-G-GG-TAGTA
*
17387 AGCATCTCGTTGAGGGACAGAAGGAA
63 AGCATCTCGCTGAGGGACAGAAGGAA
17413 TTTGGTGCGG
Statistics
Matches: 79, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
93 46 0.58
94 1 0.01
95 2 0.03
96 30 0.38
ACGTcount: A:0.23, C:0.14, G:0.38, T:0.24
Consensus pattern (93 bp):
TGAGCAGGAGGCATCGGGAATTGCTGACTTGAAGTCTCCTGAGGTTGGCCAGGTGGGTAGTAAGC
ATCTCGCTGAGGGACAGAAGGAACTTGA
Found at i:22262 original size:31 final size:31
Alignment explanation
Indices: 22224--22300 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
22214 AGTTACGTCT
*
22224 GGGACCATATTGCAAATGGACTAAATGTTGA
1 GGGACCATATTGCAAACGGACTAAATGTTGA
22255 GGGACCATATTGCAAACGGACTAAATGTTGA
1 GGGACCATATTGCAAACGGACTAAATGTTGA
* **
22286 GAGATTATATTGCAA
1 GGGACCATATTGCAA
22301 GTTTTAAAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (31 bp):
GGGACCATATTGCAAACGGACTAAATGTTGA
Found at i:23187 original size:12 final size:12
Alignment explanation
Indices: 23170--23195 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23160 AAAATATTAG
23170 TTTACCTCCAAA
1 TTTACCTCCAAA
23182 TTTACCTCCAAA
1 TTTACCTCCAAA
23194 TT
1 TT
23196 GTTAATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (12 bp):
TTTACCTCCAAA
Found at i:23353 original size:9 final size:9
Alignment explanation
Indices: 23339--23363 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23329 ATTTTACATT
23339 ATTTTCTAA
1 ATTTTCTAA
23348 ATTTTCTAA
1 ATTTTCTAA
23357 ATTTTCT
1 ATTTTCT
23364 TTAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (9 bp):
ATTTTCTAA
Found at i:23657 original size:45 final size:48
Alignment explanation
Indices: 23586--23674 Score: 123
Period size: 45 Copynumber: 1.9 Consensus size: 48
23576 AGAAACATTC
*
23586 AAAAGTCATATATAGGGATGACATTAGATTGTTT-AAAAATTTAGGAT
1 AAAAGTCATATATAGGGATGACATTAGAATGTTTAAAAAATTTAGGAT
*
23633 AAAAGTCA-AT-TATGGATGGA-ATTAGAATGTTTAAAAAATTTA
1 AAAAGTCATATATAGGGAT-GACATTAGAATGTTTAAAAAATTTA
23675 AGAATAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
45 17 0.45
46 13 0.34
47 8 0.21
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (48 bp):
AAAAGTCATATATAGGGATGACATTAGAATGTTTAAAAAATTTAGGAT
Found at i:23908 original size:59 final size:59
Alignment explanation
Indices: 23808--23953 Score: 181
Period size: 60 Copynumber: 2.5 Consensus size: 59
23798 TTTGATGGGT
* * *
23808 AAAG-TACATAAATGATATCTCAACTATAAGATCTTGATTTGTTGAGTCTC-CAACTATTA
1 AAAGTTACA-AAATGATCTCTTAACTATAAGATATTGATTTGTTGAGTC-CACAACTATTA
*
23867 AAAGTTACAAAATGATCTCTTAACTATAGGATATT-ATTTTGTTGAGTCCATCAACTATTA
1 AAAGTTACAAAATGATCTCTTAACTATAAGATATTGA-TTTGTTGAGTCCA-CAACTATTA
* *
23927 AAAGTTACAAAATGGTCACTTAACTAT
1 AAAGTTACAAAATGATCTCTTAACTAT
23954 TCATTATGTT
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
58 2 0.03
59 37 0.48
60 38 0.49
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (59 bp):
AAAGTTACAAAATGATCTCTTAACTATAAGATATTGATTTGTTGAGTCCACAACTATTA
Found at i:25627 original size:2 final size:2
Alignment explanation
Indices: 25622--25667 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
25612 ATTTGATTTA
25622 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25664 AT AT
1 AT AT
25668 TTTTGATATT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25718 original size:21 final size:21
Alignment explanation
Indices: 25676--25718 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
25666 ATTTTTGATA
*
25676 TTATGTTTGATATTTATAAAT
1 TTATGTTTGATATATATAAAT
* *
25697 TTATGTTTGTTATATATTAAT
1 TTATGTTTGATATATATAAAT
25718 T
1 T
25719 AATTTAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (21 bp):
TTATGTTTGATATATATAAAT
Found at i:34487 original size:31 final size:31
Alignment explanation
Indices: 34437--34497 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
34427 GTTGATAATT
* *
34437 AAATTTATCAGATTATTATAAGATAATCATC
1 AAATTTATCAAATTATTATAAAATAATCATC
* * *
34468 AAATTTATTAAATTTTTATAAAATGATCAT
1 AAATTTATCAAATTATTATAAAATAATCAT
34498 TAATTTTTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.43
Consensus pattern (31 bp):
AAATTTATCAAATTATTATAAAATAATCATC
Found at i:40630 original size:20 final size:21
Alignment explanation
Indices: 40577--40638 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
40567 ATTCCCCTGT
40577 GGGGGGAATCGGTTCCTCTTCAA
1 GGGGGGAATCGGTTCC-C-TCAA
*
40600 AGGGGGAATCGGTTCCCTC-A
1 GGGGGGAATCGGTTCCCTCAA
* *
40620 GGGGGGGATCGATTCCCTC
1 GGGGGGAATCGGTTCCCTC
40639 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.49
21 2 0.06
22 1 0.03
23 15 0.43
ACGTcount: A:0.16, C:0.24, G:0.37, T:0.23
Consensus pattern (21 bp):
GGGGGGAATCGGTTCCCTCAA
Found at i:44488 original size:22 final size:21
Alignment explanation
Indices: 44446--44485 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
44436 GAGTTTGTTT
*
44446 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
44467 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
44486 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:52741 original size:14 final size:14
Alignment explanation
Indices: 52722--52777 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
52712 CGTTTGTGAA
52722 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
*
52736 CGTTCGATTATGTT
1 CGTTCGGTTATGTT
52750 CG-T---TTATGTT
1 CGTTCGGTTATGTT
52760 CGTTCGGTTATGTT
1 CGTTCGGTTATGTT
52774 CGTT
1 CGTT
52778 TATGTTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 26 0.70
ACGTcount: A:0.09, C:0.14, G:0.25, T:0.52
Consensus pattern (14 bp):
CGTTCGGTTATGTT
Found at i:52750 original size:24 final size:24
Alignment explanation
Indices: 52723--52784 Score: 106
Period size: 24 Copynumber: 2.6 Consensus size: 24
52713 GTTTGTGAAC
*
52723 GTTCGGTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCGTTCGATTAT
*
52747 GTTCGTTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTCGATTAT
52771 GTTCGTTTATGTTC
1 GTTCGTTTATGTTC
52785 ATTCATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.10, C:0.13, G:0.24, T:0.53
Consensus pattern (24 bp):
GTTCGTTTATGTTCGTTCGATTAT
Found at i:52795 original size:24 final size:23
Alignment explanation
Indices: 52723--52791 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 23
52713 GTTTGTGAAC
*
52723 GTTCGGTTATGTTCGTTCGATTAT
1 GTTCGTTTATGTTCGTTC-ATTAT
*
52747 GTTCGTTTATGTTCGTTCGGTTAT
1 GTTCGTTTATGTTCGTTC-ATTAT
*
52771 GTTCGTTTATGTTCATTCATT
1 GTTCGTTTATGTTCGTTCATT
52792 TATGATTAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 2 0.05
24 39 0.95
ACGTcount: A:0.12, C:0.13, G:0.22, T:0.54
Consensus pattern (23 bp):
GTTCGTTTATGTTCGTTCATTAT
Found at i:53660 original size:11 final size:11
Alignment explanation
Indices: 53644--53684 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
53634 TGGGGCAATG
53644 TCGAGCTTGAA
1 TCGAGCTTGAA
*
53655 TCGAGCTCAGAA
1 TCGAGCT-TGAA
53667 TCGAGCTTGAA
1 TCGAGCTTGAA
53678 TCGAGCT
1 TCGAGCT
53685 CGACTCTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (11 bp):
TCGAGCTTGAA
Found at i:53939 original size:16 final size:16
Alignment explanation
Indices: 53914--53946 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
53904 CCAACGTTTA
*
53914 TGTCCGTTTATGTTCG
1 TGTCCATTTATGTTCG
53930 TGTCCATTTATGTTCG
1 TGTCCATTTATGTTCG
53946 T
1 T
53947 ATTTGTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.18, G:0.21, T:0.52
Consensus pattern (16 bp):
TGTCCATTTATGTTCG
Found at i:53955 original size:16 final size:16
Alignment explanation
Indices: 53918--53974 Score: 60
Period size: 16 Copynumber: 3.6 Consensus size: 16
53908 CGTTTATGTC
* *
53918 CGTTTATGTTCGTGTC
1 CGTTTATGTTCGTATT
*
53934 CATTTATGTTCGTATT
1 CGTTTATGTTCGTATT
* * *
53950 TGTTTATGTTTGTGTT
1 CGTTTATGTTCGTATT
53966 CGTTTATGT
1 CGTTTATGT
53975 GCGTTTATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.11, C:0.11, G:0.21, T:0.58
Consensus pattern (16 bp):
CGTTTATGTTCGTATT
Found at i:54069 original size:16 final size:16
Alignment explanation
Indices: 54048--54080 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
54038 AAAAAAATTT
54048 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
54064 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
54080 T
1 T
54081 TTATTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.24, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:55561 original size:27 final size:27
Alignment explanation
Indices: 55509--55564 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
55499 TTAATATTTT
** *
55509 TTAATATTTTTGGTAAAATATCTAATA
1 TTAATATTTTCAGTAAAATATATAATA
55536 TTAATATTTTCAGTAAAA-ATAATAATA
1 TTAATATTTTCAGTAAAATAT-ATAATA
55563 TT
1 TT
55565 TTAAGTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (27 bp):
TTAATATTTTCAGTAAAATATATAATA
Found at i:55690 original size:32 final size:33
Alignment explanation
Indices: 55612--55692 Score: 87
Period size: 32 Copynumber: 2.5 Consensus size: 33
55602 TAAAATACCC
* *
55612 AATAATAATATTTCTGATAAAAATAATAATAAT
1 AATAATAATATTTTTGAAAAAAATAATAATAAT
* * *
55645 -TTAA-AATACTTTTTTAAAAAAATATTAA-AAT
1 AATAATAATA-TTTTTGAAAAAAATAATAATAAT
55676 AATAATAATATTTTTGA
1 AATAATAATATTTTTGA
55693 TAACATATTT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
31 7 0.18
32 27 0.71
33 4 0.11
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (33 bp):
AATAATAATATTTTTGAAAAAAATAATAATAAT
Found at i:56227 original size:14 final size:14
Alignment explanation
Indices: 56208--56236 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
56198 AGTATATTTG
56208 ATTTAAAGGAGATT
1 ATTTAAAGGAGATT
56222 ATTTAAAGGAGATT
1 ATTTAAAGGAGATT
56236 A
1 A
56237 GATCTTAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (14 bp):
ATTTAAAGGAGATT
Found at i:57065 original size:17 final size:19
Alignment explanation
Indices: 57029--57066 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
57019 AGAAAAACAA
*
57029 TATAATTATACACTTATTT
1 TATAATTATACACCTATTT
57048 TATAATTA-A-ACCTATTT
1 TATAATTATACACCTATTT
57065 TA
1 TA
57067 AATGATCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 1 0.06
19 8 0.44
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (19 bp):
TATAATTATACACCTATTT
Found at i:61613 original size:20 final size:20
Alignment explanation
Indices: 61570--61615 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
61560 GAGTGTGGCG
* *
61570 GCGGACGGCGGCAGCAGACG
1 GCGGGCGGCGGCAGCAGACA
* *
61590 GCGGGCGGCGGCAGCGGCCA
1 GCGGGCGGCGGCAGCAGACA
61610 GCGGGC
1 GCGGGC
61616 AACAGACGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.33, G:0.54, T:0.00
Consensus pattern (20 bp):
GCGGGCGGCGGCAGCAGACA
Found at i:88117 original size:22 final size:22
Alignment explanation
Indices: 88073--88118 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
88063 AAAAAAGGTT
* * *
88073 AACTATCCATTCAATGTTTTAA
1 AACTAACCATTCAATATTCTAA
*
88095 AACTAACCATTCTATATTCTAA
1 AACTAACCATTCAATATTCTAA
88117 AA
1 AA
88119 ATACCAATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (22 bp):
AACTAACCATTCAATATTCTAA
Found at i:91474 original size:84 final size:84
Alignment explanation
Indices: 91326--91485 Score: 250
Period size: 84 Copynumber: 1.9 Consensus size: 84
91316 ATCGCCGCCT
* * *
91326 ATGTTTGAATGCAAATGAGCTAAATATAGAATGTGTATGTATGAATTGAGTTAGAATAAATACAT
1 ATGTTTGAATGCAAATGAGCTAAATATAGAATGTGTATGTATGAATTAAGGTAAAATAAATACAT
91391 AAGTTAACATAACCAGCCC
66 AAGTTAACATAACCAGCCC
* * *
91410 ATGTTTGAATGCAAATGAGCTAAGTATAGAATGAT-TATGTATGAATTAAGGTAAAATGAGTACA
1 ATGTTTGAATGCAAATGAGCTAAATATAGAATG-TGTATGTATGAATTAAGGTAAAATAAATACA
91474 TAAGTTAACATA
65 TAAGTTAACATA
91486 GCTATGACAT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
84 68 0.99
85 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (84 bp):
ATGTTTGAATGCAAATGAGCTAAATATAGAATGTGTATGTATGAATTAAGGTAAAATAAATACAT
AAGTTAACATAACCAGCCC
Found at i:93744 original size:42 final size:42
Alignment explanation
Indices: 93690--93829 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
93680 CGAAAGTACG
*
93690 ATGCTTCCTTTCGTTCTACTTTAGATGAGAATCGATAGTGAT
1 ATGCCTCCTTTCGTTCTACTTTAGATGAGAATCGATAGTGAT
* *
93732 ATGCCTCTTTTCGTTCTACTTGA-ATCGA-AA--G-T-GTGAT
1 ATGCCTCCTTTCGTTCTACTTTAGAT-GAGAATCGATAGTGAT
* * * *
93769 GAT---TCCTTCCGTTCTAATTTAGATGAGAATCGAAAGTGTT
1 -ATGCCTCCTTTCGTTCTACTTTAGATGAGAATCGATAGTGAT
93809 ATGCCTCCTTTCGTTCTACTT
1 ATGCCTCCTTTCGTTCTACTT
93830 GAATCAAAAG
Statistics
Matches: 76, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
35 16 0.21
36 4 0.05
37 5 0.07
38 4 0.05
39 3 0.04
40 4 0.05
41 4 0.05
42 36 0.47
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (42 bp):
ATGCCTCCTTTCGTTCTACTTTAGATGAGAATCGATAGTGAT
Found at i:93749 original size:77 final size:77
Alignment explanation
Indices: 93638--93864 Score: 321
Period size: 77 Copynumber: 2.9 Consensus size: 77
93628 ATTCTGTCAT
* * * * *
93638 TGAGAATCGAAAGTGTTATACCTCCTTTT-TTTCTACTTGAATCGAAAGTACGATGCTTCCTTTC
1 TGAGAATCGAAAGTGTTATGCCT-CTTTTCGTTCTACTTGAATCGAAAGTGCGATGATTCCTTCC
93702 GTTCTACTTTAGA
65 GTTCTACTTTAGA
* * *
93715 TGAGAATCGATAGTGATATGCCTCTTTTCGTTCTACTTGAATCGAAAGTGTGATGATTCCTTCCG
1 TGAGAATCGAAAGTGTTATGCCTCTTTTCGTTCTACTTGAATCGAAAGTGCGATGATTCCTTCCG
*
93780 TTCTAATTTAGA
66 TTCTACTTTAGA
* * * *
93792 TGAGAATCGAAAGTGTTATGCCTCCTTTCGTTCTACTTGAATCAAAAGTGCGATGTTTCATTCCG
1 TGAGAATCGAAAGTGTTATGCCTCTTTTCGTTCTACTTGAATCGAAAGTGCGATGATTCCTTCCG
93857 TTCTACTT
66 TTCTACTT
93865 GAATCGAAAG
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
76 5 0.04
77 127 0.96
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (77 bp):
TGAGAATCGAAAGTGTTATGCCTCTTTTCGTTCTACTTGAATCGAAAGTGCGATGATTCCTTCCG
TTCTACTTTAGA
Found at i:93782 original size:35 final size:35
Alignment explanation
Indices: 93743--93966 Score: 186
Period size: 35 Copynumber: 6.3 Consensus size: 35
93733 TGCCTCTTTT
* *
93743 CGTTCTACTTGAATCGAAAGTGTGATGATTCCTTC
1 CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
* ** * *
93778 CGTTCTAATTTAGATGAGAATCGAAAGTGTTATGCCTCCTTT
1 CGTTCT-A-CT---T--GAATCGAAAGTGCGATGCTTCCTTC
* * *
93820 CGTTCTACTTGAATCAAAAGTGCGATGTTTCATTC
1 CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
93855 CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
1 CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
* ** *
93890 CGTTCTACTT---TCAAAAGTGTTATGTCTT-CTTT
1 CGTTCTACTTGAATCGAAAGTGCGATG-CTTCCTTC
* * * *
93922 CGTTCTACTTGAATTGAAAGTGCAATGTTTCCATC
1 CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
93957 CGTTCTACTT
1 CGTTCTACTT
93967 TGTTCACATT
Statistics
Matches: 150, Mismatches: 27, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
32 24 0.16
33 3 0.02
34 2 0.01
35 88 0.59
36 1 0.01
37 2 0.01
40 2 0.01
41 1 0.01
42 27 0.18
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (35 bp):
CGTTCTACTTGAATCGAAAGTGCGATGCTTCCTTC
Found at i:93941 original size:67 final size:67
Alignment explanation
Indices: 93795--93967 Score: 204
Period size: 67 Copynumber: 2.5 Consensus size: 67
93785 ATTTAGATGA
** * *
93795 GAATCGAAAGTGTTATGCCTCCTTTCGTTCTACTTGAATCAAAAGTGCGATGTTTCATTCCGTTC
1 GAATCGAAAGTGCAATGCTTCCTTCCGTTCTACTT---TCAAAAGTGCGATGTTTCATTCCGTTC
93860 TACTT
63 TACTT
* ** *
93865 GAATCGAAAGTGCGATGCTTCCTTCCGTTCTACTTTCAAAAGTGTTATGTCTTC-TTTCGTTCTA
1 GAATCGAAAGTGCAATGCTTCCTTCCGTTCTACTTTCAAAAGTGCGATGT-TTCATTCCGTTCTA
93929 CTT
65 CTT
* * *
93932 GAATTGAAAGTGCAATGTTTCCATCCGTTCTACTTT
1 GAATCGAAAGTGCAATGCTTCCTTCCGTTCTACTTT
93968 GTTCACATTT
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
67 57 0.63
68 3 0.03
70 31 0.34
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (67 bp):
GAATCGAAAGTGCAATGCTTCCTTCCGTTCTACTTTCAAAAGTGCGATGTTTCATTCCGTTCTAC
TT
Found at i:98937 original size:19 final size:19
Alignment explanation
Indices: 98901--98938 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
98891 TTATATCTCT
*
98901 CATTTCATCTTATTTCTTC
1 CATTTCATCTTATCTCTTC
98920 CATTTC-TCTTCATCTCTTC
1 CATTTCATCTT-ATCTCTTC
98939 TTCCATTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.13, C:0.32, G:0.00, T:0.55
Consensus pattern (19 bp):
CATTTCATCTTATCTCTTC
Found at i:100766 original size:32 final size:32
Alignment explanation
Indices: 100716--100778 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
100706 GGCATTCAGA
* *
100716 TAATGCACAGCAGAGTCAGTGTTACATTTAGT
1 TAATGCACAGAAGAGTCAGTGTCACATTTAGT
* * *
100748 TAATGCATAGAAGTGTCAGTGTCGCATTTAG
1 TAATGCACAGAAGAGTCAGTGTCACATTTAG
100779 ATTATTACAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (32 bp):
TAATGCACAGAAGAGTCAGTGTCACATTTAGT
Found at i:102011 original size:10 final size:10
Alignment explanation
Indices: 101984--102038 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
101974 AGAAGGGAAT
101984 AAGAGAAATG
1 AAGAGAAATG
101994 AAGAAGAAATG
1 AAG-AGAAATG
102005 AAGAGAAATG
1 AAGAGAAATG
*
102015 GA-AGAAATG
1 AAGAGAAATG
102024 -AGATGAAATG
1 AAGA-GAAATG
102034 -AGAGA
1 AAGAGA
102039 TATAAAGCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
8 1 0.02
9 10 0.24
10 20 0.49
11 10 0.24
ACGTcount: A:0.58, C:0.00, G:0.31, T:0.11
Consensus pattern (10 bp):
AAGAGAAATG
Found at i:102020 original size:19 final size:20
Alignment explanation
Indices: 101984--102036 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 20
101974 AGAAGGGAAT
101984 AAGAGAAATGAAGAAGAAATG
1 AAGAGAAATG-AGAAGAAATG
102005 AAGAGAAATG-GAAGAAATG
1 AAGAGAAATGAGAAGAAATG
102024 -AGATGAAATGAGA
1 AAGA-GAAATGAGA
102037 GATATAAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.10
19 15 0.50
20 2 0.07
21 10 0.33
ACGTcount: A:0.58, C:0.00, G:0.30, T:0.11
Consensus pattern (20 bp):
AAGAGAAATGAGAAGAAATG
Found at i:102349 original size:14 final size:14
Alignment explanation
Indices: 102332--102361 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
102322 TTACTTAACA
102332 AGGATAATTTAATT
1 AGGATAATTTAATT
102346 AGGATAATTTAATT
1 AGGATAATTTAATT
102360 AG
1 AG
102362 TAGTGTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (14 bp):
AGGATAATTTAATT
Found at i:102982 original size:8 final size:8
Alignment explanation
Indices: 102969--103001 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
102959 AGGATGAATT
102969 TGAAATAA
1 TGAAATAA
102977 TGAAATAA
1 TGAAATAA
102985 TGAAATAA
1 TGAAATAA
102993 TGAAATAA
1 TGAAATAA
103001 T
1 T
103002 TATTTTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (8 bp):
TGAAATAA
Found at i:103110 original size:59 final size:59
Alignment explanation
Indices: 102999--103112 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 59
102989 ATAATGAAAT
* * ***
102999 AATTATTTTATAACTTTTAATAACCGGGACACTCAACAAAATAATGCCCTATAATCGAG
1 AATTATTTTATAACTTTTAATAACAGAGACACTCAACAAAATAACAACCTATAATCGAG
* * *
103058 AATTATTTTATAATTTTTAATAACTAGAGA-ACTCAATAAAATAACAATCTATAAT
1 AATTATTTTATAACTTTTAATAAC-AGAGACACTCAACAAAATAACAACCTATAAT
103113 TAAAGCCTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
59 43 0.93
60 3 0.07
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.34
Consensus pattern (59 bp):
AATTATTTTATAACTTTTAATAACAGAGACACTCAACAAAATAACAACCTATAATCGAG
Found at i:103587 original size:35 final size:35
Alignment explanation
Indices: 103540--103615 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
103530 AAAACAATCA
* *
103540 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
* *
103575 TCAATTTTATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
103610 TAAATT
1 TCAATT
103616 AAATTCAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:104153 original size:130 final size:130
Alignment explanation
Indices: 104009--104253 Score: 418
Period size: 130 Copynumber: 1.9 Consensus size: 130
103999 TTATTTATAT
*
104009 AATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTA
1 AATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTA
* * *
104074 GCACATGATCATGACACGTGTCATTGGTGACACGTGTTACCACCTAATTATTTATATATGCTATC
66 ACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATC
104139 AATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTA
1 AATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTA
* * * *
104204 ACACATGATCATGATATGTGTTATTGGTGACACATGTCACCTCCTAATTA
66 ACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTA
104254 GAAGAAAATT
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
130 107 1.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (130 bp):
AATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTA
ACACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATC
Found at i:104284 original size:130 final size:129
Alignment explanation
Indices: 104020--104284 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
104010 ATTTGGTCCT
* *
104020 AAATTAAATAAAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * *** * * **** *
104085 TGACACGTGTCATTGGTGACACGTGTTACCACCTAATTATTTATATATGCTATCAATTTGGTCCT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGT-CA
104150 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
1 AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
* * * * *
104215 TGATATGTGTTATTGGTGACACATGTCACCTCCTAATTAGAAGAAAATTAAGTTA-CAAAGAAGT
66 TGACACGTGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAAGAAGT
104279 -A
128 CA
104280 AAATT
1 AAATT
104285 TGGGTCTTGG
Statistics
Matches: 113, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
130 100 0.88
132 8 0.07
133 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (129 bp):
AAATTAAATAAAATTTAATAAATTAATCATTTAATCAGGATCTGACATGTGTTAACACATGATCA
TGACACGTGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAAGTCA
Found at i:104612 original size:28 final size:27
Alignment explanation
Indices: 104581--104643 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
104571 AGTTGATACA
*
104581 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
104609 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
104637 ATATTTT
1 ATATTTT
104644 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:104742 original size:16 final size:17
Alignment explanation
Indices: 104721--104753 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
104711 ATTTCTTATT
104721 AAAAATAAAAT-ATTCA
1 AAAAATAAAATGATTCA
*
104737 AAAAATATAATGATTCA
1 AAAAATAAAATGATTCA
104754 TACATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAAATAAAATGATTCA
Found at i:104898 original size:21 final size:21
Alignment explanation
Indices: 104874--104916 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
104864 TATTACCTTA
104874 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
104895 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAGAATTT
104916 A
1 A
104917 GGGTTTAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.47
Consensus pattern (21 bp):
AATTGAAGTATTTTAGAATTT
Found at i:104934 original size:35 final size:35
Alignment explanation
Indices: 104885--104970 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
104875 ATTGAAGTAT
** * *
104885 TTTAGAATTTAATTGAAGTATTTTAGAATTTAGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
* * *
104920 TTTAGAATAAAATTGAATTACTTTGGAAATTGGGG
1 TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
*
104955 TTTAGAATGAAATTGA
1 TTTAGAATAAAATTGA
104971 TGACTGTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.21, T:0.41
Consensus pattern (35 bp):
TTTAGAATAAAATTGAAGTACTTTAGAAATTAGGG
Found at i:106925 original size:25 final size:25
Alignment explanation
Indices: 106891--106946 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
106881 CACCATGGTT
*
106891 GCTTCGATGAAATCTGATATGTACG
1 GCTTCGATGAAATCCGATATGTACG
*
106916 GCTTCGATGAAATCCGATGTGTACG
1 GCTTCGATGAAATCCGATATGTACG
106941 GCTTCG
1 GCTTCG
106947 GTGTCGTGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (25 bp):
GCTTCGATGAAATCCGATATGTACG
Found at i:123433 original size:16 final size:16
Alignment explanation
Indices: 123414--123445 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
123404 TACCATTCCA
123414 TCTTAAATTCATTCTT
1 TCTTAAATTCATTCTT
123430 TCTTAAATTCATTCTT
1 TCTTAAATTCATTCTT
123446 AAACTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.00, T:0.56
Consensus pattern (16 bp):
TCTTAAATTCATTCTT
Found at i:128011 original size:91 final size:92
Alignment explanation
Indices: 127834--128021 Score: 333
Period size: 91 Copynumber: 2.0 Consensus size: 92
127824 TTCAACAAAG
127834 TACAATTTGGTTAAGATTTCCCCATATCATAATCCCGACTAAAGCAACTCATTTTCATGTTCTTG
1 TACAATTTGGTTAAGATTTCCCCATATCATAATCCCGACT--A--AACTCATTTTCATGTTCTTG
127899 TTGGCTTCAACGAAATGAACAATGCACGAAA
62 TTGGCTTCAACGAAATGAACAATGCACGAAA
127930 TACAATTTGGTTAAGATTTCCCCATATCATAATCCCGACT-AACTCATTTTCATGTTCTTGTTGG
1 TACAATTTGGTTAAGATTTCCCCATATCATAATCCCGACTAAACTCATTTTCATGTTCTTGTTGG
127994 CTTCAACGAAATGAACAATGCACGAAA
66 CTTCAACGAAATGAACAATGCACGAAA
128021 T
1 T
128022 TTCTAGGAGG
Statistics
Matches: 92, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
91 52 0.57
96 40 0.43
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.32
Consensus pattern (92 bp):
TACAATTTGGTTAAGATTTCCCCATATCATAATCCCGACTAAACTCATTTTCATGTTCTTGTTGG
CTTCAACGAAATGAACAATGCACGAAA
Found at i:128304 original size:6 final size:6
Alignment explanation
Indices: 128293--128318 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
128283 CAATGCAAGT
128293 GAAAGA GAAAGA GAAAGA GAAAGA GA
1 GAAAGA GAAAGA GAAAGA GAAAGA GA
128319 GGAGTTGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (6 bp):
GAAAGA
Done.