Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004486.1 Hibiscus syriacus cultivar Beakdansim tig00009885_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72074

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1435--1488
20
2.7
19
83
8
72
46
22
16
14
1.84
2076--2122
20
2.3
20
92
0
76
21
21
21
36
1.96
21764--21788
12
2.1
12
100
0
50
32
16
8
44
1.76
23881--23921
19
2.2
19
86
8
57
51
2
4
41
1.36
28327--28489
65
2.5
65
84
1
220
27
15
26
30
1.96
28437--28487
19
2.7
19
85
8
70
25
15
35
23
1.94
28331--28538
65
3.2
63
79
13
201
27
17
25
29
1.97
33347--33393
20
2.2
21
78
17
53
44
6
12
36
1.68
35481--35643
65
2.5
66
83
3
206
27
15
26
30
1.96
35592--35641
19
2.7
18
82
11
66
26
16
34
24
1.95
36257--36328
29
2.4
30
81
2
83
47
18
5
29
1.71
44245--44309
27
2.4
27
97
0
121
41
10
16
30
1.83
45272--45320
3
16.3
3
100
0
98
67
0
0
32
0.91
46807--47097
43
6.7
43
78
5
257
49
5
16
27
1.68
46860--47098
87
2.7
88
81
8
283
51
6
15
27
1.67
47557--47616
21
3.2
20
65
30
51
33
5
18
43
1.72
47549--47657
35
3.0
36
87
5
166
31
5
18
44
1.72
51311--51419
35
3.0
36
90
5
166
31
5
18
44
1.72
59137--59242
45
2.4
45
82
3
124
42
19
8
29
1.81
60782--60837
20
2.7
20
88
5
76
42
1
5
50
1.35
60993--61035
20
2.2
20
84
12
54
37
2
9
51
1.47
66088--66579
182
2.7
182
89
1
745
41
13
16
29
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69006--69072
33
2.0
33
97
0
125
29
0
46
23
1.53
70823--70871
19
2.6
19
86
0
71
32
2
6
59
1.34
71222--71983
200
3.8
198
84
3
954
37
14
15
32
1.88
71954--72004
21
2.4
21
93
0
84
21
13
19
45
1.85

Tables:   1

The End!