genome.fa.s4487.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004487.1 Hibiscus syriacus cultivar Beakdansim tig00009886_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95216

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6951--6991	20	2.0	20	95	0	73	34	0	2	63	1.08
7778--7808	9	3.4	9	100	0	62	77	0	0	22	0.77
7778--7814	18	2.1	18	89	0	56	75	5	0	18	0.99
7803--7832	13	2.3	13	100	0	60	73	13	0	13	1.10
7833--7873	21	1.9	20	90	10	55	34	4	2	58	1.32
11338--12360	216	4.8	216	91	3	1628	50	8	12	28	1.68
11320--12360	425	2.4	423	91	2	1654	51	8	12	28	1.68
12520--12584	20	3.2	20	76	12	69	47	3	4	44	1.39
12526--12600	22	3.5	22	80	14	93	45	2	6	45	1.43
12526--12609	22	3.9	22	76	19	86	44	2	7	46	1.44
12532--12629	42	2.3	42	82	6	101	42	6	7	43	1.56
12739--12780	22	1.9	21	90	9	66	47	0	4	47	1.23
12532--12815	20	14.2	20	65	20	114	44	5	5	44	1.52
12764--12817	22	2.5	22	82	11	74	44	1	5	48	1.37
12826--12873	21	2.3	21	85	7	62	16	2	35	45	1.59
12843--12873	7	4.4	7	100	0	62	16	0	38	45	1.47
12879--12907	6	4.8	6	100	0	58	34	0	0	65	0.93
12879--12969	40	2.3	39	85	12	123	39	4	1	54	1.27
12885--13019	33	4.1	33	81	8	127	42	6	2	47	1.45
12937--13045	33	3.4	32	82	10	116	44	7	6	42	1.58
13061--13128	18	3.7	18	77	14	75	41	11	7	39	1.70
13060--13120	20	3.2	19	74	25	65	40	9	6	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13096--13195	29	3.7	29	74	20	117	38	10	7	45	1.65
13069--13181	20	6.2	18	69	26	62	38	9	7	44	1.65
12976--13185	89	2.4	84	83	9	271	41	8	8	41	1.65
13094--13243	51	2.9	51	88	5	205	39	8	5	46	1.57
13176--13246	2	33.0	2	73	18	54	43	5	2	47	1.41
13178--13241	9	6.7	9	71	25	51	43	6	1	48	1.37
13176--13246	20	3.5	20	83	9	83	43	5	2	47	1.41
13200--13268	34	2.0	36	85	5	97	46	7	2	43	1.46
13149--13268	29	4.3	28	70	21	65	42	7	4	45	1.51
13994--14042	19	2.6	19	84	9	57	24	28	20	26	1.99
22221--22253	13	2.5	13	90	9	50	36	15	9	39	1.79
25721--25779	20	2.8	21	76	10	57	16	25	33	23	1.96
31502--31545	21	2.1	22	87	8	65	18	22	38	20	1.93
32024--32234	65	3.3	64	75	14	200	29	22	19	28	1.98
34176--34306	51	2.6	49	79	12	142	48	4	3	42	1.41
34383--34421	16	2.4	16	91	0	60	33	17	28	20	1.96
37194--37234	19	2.1	19	86	4	55	51	0	0	48	1.00
37190--37243	20	2.7	20	77	8	65	50	0	0	50	1.00
38512--38662	39	3.8	40	83	7	200	17	41	13	26	1.87
38836--38961	3	41.7	3	72	19	77	64	0	33	1	1.09
38836--38972	13	10.5	13	72	7	80	64	0	32	2	1.10
38836--38959	20	5.7	22	74	19	109	64	0	33	1	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40531--40642	56	2.0	56	92	0	188	29	6	25	39	1.80
41474--41513	21	1.9	21	90	10	64	15	30	37	17	1.90
42911--42996	40	2.2	40	86	0	118	37	20	16	25	1.93
42932--43355	41	10.4	40	79	5	343	28	18	18	34	1.95
42932--43355	82	5.2	82	77	7	387	28	18	18	34	1.95
42932--43355	123	3.5	123	80	6	403	28	18	18	34	1.95
45965--46319	43	8.3	43	82	3	392	23	22	20	33	1.97
45965--46319	128	2.8	129	79	3	374	23	22	20	33	1.97
46003--46326	171	1.9	171	85	2	445	24	21	19	34	1.97
45965--46360	86	4.6	85	79	6	381	24	21	20	33	1.97
47523--47548	8	3.2	8	100	0	52	65	0	0	34	0.93
48918--49008	18	5.2	18	73	18	77	3	27	1	68	1.12
48914--48998	32	2.7	32	87	3	118	2	25	1	70	1.06
59055--59101	3	16.0	3	86	4	69	70	0	29	0	0.88
59060--59094	17	2.1	17	94	0	61	68	0	31	0	0.90
59055--59100	23	2.0	23	100	0	92	69	0	30	0	0.89
60117--60616	127	4.0	127	89	1	718	29	25	18	26	1.98
62239--62279	19	2.2	19	86	8	57	51	2	4	41	1.36
65430--65456	5	5.4	5	100	0	54	0	22	55	22	1.44
66751--66873	31	4.0	31	92	2	194	36	21	20	21	1.95
70678--70800	31	4.0	31	92	2	194	36	21	20	21	1.95
80293--80402	55	2.0	55	100	0	220	18	20	30	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82583--82625	2	21.5	2	100	0	86	48	0	0	51	1.00
82683--82722	20	2.1	19	90	4	62	30	0	2	67	1.04
85781--85830	23	2.2	23	85	0	64	42	8	18	32	1.79
85744--85906	87	1.9	87	92	0	272	42	11	13	33	1.79
85907--86431	200	2.6	197	83	5	621	30	15	15	39	1.87
86253--86586	178	1.9	179	83	0	445	32	11	13	41	1.81
89084--89132	19	2.6	19	90	0	80	53	12	2	32	1.50
90451--91023	200	2.9	196	86	4	799	31	15	12	40	1.84
92997--94153	200	5.8	199	78	9	1094	32	16	14	37	1.88
93401--93450	20	2.4	21	90	3	75	46	18	14	22	1.84
93096--94150	394	2.6	401	81	7	1115	31	16	14	37	1.89
93421--94163	196	3.8	196	83	6	899	31	16	14	37	1.89
94510--94556	18	2.6	19	83	10	62	57	6	2	34	1.36

Tables:   1

The End!