genome.fa.s4488.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004488.1 Hibiscus syriacus cultivar Beakdansim tig00009887_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57734

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585--1184	59	10.3	59	86	5	803	32	22	11	33	1.89
1059--1153	31	3.2	31	60	14	72	34	23	8	33	1.85
3033--3076	21	2.0	23	91	8	74	36	13	27	22	1.92
12753--12846	45	2.1	45	85	0	125	23	5	47	23	1.71
12812--12933	36	3.1	36	68	21	102	24	6	45	22	1.76
12771--12933	45	3.8	44	79	10	173	24	6	46	22	1.74
12859--12959	36	2.8	36	83	1	105	31	4	38	24	1.77
12979--13022	3	14.0	3	90	9	70	34	0	0	65	0.93
12980--13022	19	2.3	19	91	0	77	34	0	0	65	0.93
14384--14412	9	3.3	9	95	4	51	20	0	0	79	0.74
20394--20439	12	3.7	12	77	11	56	50	19	2	28	1.60
20740--20865	36	3.3	38	75	12	107	33	17	11	37	1.86
20777--21038	138	1.9	136	86	6	368	33	17	9	39	1.83
21203--21283	27	3.0	26	77	12	83	29	14	13	41	1.84
21466--21562	35	2.7	35	83	10	108	29	17	13	39	1.88
21550--21724	67	2.6	67	92	0	289	32	21	12	34	1.90
21787--21883	28	3.4	28	84	9	106	25	15	13	45	1.83
22060--22133	39	1.9	38	86	2	103	21	41	14	21	1.89
22477--22512	10	3.6	10	88	11	56	33	0	0	66	0.92
22477--22512	13	2.8	13	86	0	54	33	0	0	66	0.92
23872--23900	13	2.2	13	100	0	58	20	0	0	79	0.74
25063--25157	36	2.6	36	81	0	100	27	4	43	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29530--29568	21	2.0	20	90	10	62	61	2	12	23	1.43
40536--40565	12	2.5	12	100	0	60	43	0	13	43	1.43
44886--44989	29	3.6	27	79	11	100	39	5	8	46	1.59

Tables:   1

The End!