genome.fa.s4489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004489.1 Hibiscus syriacus cultivar Beakdansim tig00009889_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58241

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260--300	17	2.4	17	87	0	55	24	9	29	36	1.87
570--673	55	1.9	55	89	0	163	44	10	21	24	1.83
1333--1361	9	3.3	9	90	9	51	41	0	48	10	1.37
7031--7124	42	2.3	41	86	1	134	22	23	23	30	1.99
7720--7833	42	2.7	42	76	8	124	25	24	17	32	1.97
6702--8081	233	5.9	233	90	0	2093	31	15	17	35	1.92
8318--8390	3	24.3	3	100	0	146	32	0	0	67	0.91
14590--14683	46	2.0	47	85	8	129	35	23	8	32	1.85
18039--18074	16	2.2	16	95	0	63	0	11	2	86	0.68
18712--18774	7	9.5	6	85	11	63	3	14	1	80	0.90
18711--18774	20	3.2	20	84	10	85	3	14	1	81	0.89
18983--19021	3	13.0	3	94	0	69	64	0	2	33	1.08
19256--20002	233	3.2	233	87	2	1088	34	17	16	30	1.92
19828--20152	150	2.2	150	91	2	519	35	15	14	34	1.88
19610--20385	383	2.0	383	91	1	1250	35	16	15	32	1.90
19978--20556	233	2.5	233	95	0	1014	35	17	14	32	1.90
20372--20467	42	2.3	42	83	5	115	33	22	18	25	1.97
28657--28710	3	17.7	3	92	3	81	68	0	0	31	0.90
30181--30288	47	2.3	47	96	0	198	19	19	23	37	1.94
30270--30355	32	2.7	32	90	0	136	8	24	31	36	1.85
30485--30592	51	2.2	49	86	8	148	43	14	16	25	1.86
33522--33853	14	25.2	14	70	18	223	40	4	5	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33528--33698	23	7.8	22	71	18	108	40	4	5	50	1.44
33522--33603	37	2.2	37	95	0	146	39	3	7	50	1.48
33567--33827	23	12.1	22	69	21	112	40	4	4	49	1.44
33562--33721	51	3.0	50	81	6	176	41	3	4	50	1.40
33613--33816	79	2.5	79	90	3	309	40	4	4	50	1.44
33528--33786	65	4.1	65	83	8	311	40	4	5	49	1.44
33562--33842	65	4.3	65	83	9	227	40	4	4	49	1.45
36621--36697	33	2.5	30	85	6	91	41	27	20	10	1.85
36588--36703	31	3.7	29	76	12	97	37	30	20	12	1.89
36737--36775	20	2.0	20	94	0	69	17	43	12	25	1.85
40675--40779	45	2.3	46	80	4	115	29	14	20	36	1.92
40762--40801	21	1.9	21	94	0	71	22	15	30	32	1.94
43345--43403	21	2.7	22	76	21	61	27	25	23	23	2.00
49207--49255	19	2.7	17	84	9	53	26	18	30	24	1.98
49207--49386	64	2.8	60	78	12	175	26	16	27	29	1.97
49333--49371	19	2.1	19	100	0	78	23	15	41	20	1.90
49397--49436	21	1.9	21	94	0	71	22	15	30	32	1.94
51309--51642	169	2.0	169	84	1	445	22	32	18	26	1.97
54942--55021	36	2.2	36	95	0	142	30	16	16	37	1.90
57915--57977	31	2.0	32	84	3	83	26	9	7	55	1.59

Tables:   1

The End!