Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000449.1 Hibiscus syriacus cultivar Beakdansim tig00000824_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54144

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13613--13637
13
1.9
13
100
0
50
44
8
8
40
1.63
15168--15203
14
2.6
14
90
0
54
58
2
13
25
1.49
15196--15236
21
1.9
22
85
5
57
65
7
7
19
1.41
15368--15534
81
2.0
83
95
3
302
62
7
7
23
1.46
16224--16271
23
2.1
22
84
3
60
68
4
12
14
1.34
29010--29069
30
2.0
29
84
9
77
55
16
1
26
1.51
30087--30112
4
6.5
4
100
0
52
76
0
0
23
0.78
31331--31356
3
8.7
3
100
0
52
65
0
0
34
0.93
34169--34206
19
2.0
19
100
0
76
36
21
5
36
1.76
41384--41423
8
5.1
8
81
6
55
35
0
27
37
1.57
41496--42760
128
9.9
128
96
0
2293
23
24
19
32
1.97
43162--43257
33
2.9
33
82
6
122
39
2
4
54
1.32
43784--43849
21
3.2
20
89
4
78
18
25
36
19
1.94
43853--43900
21
2.3
21
85
0
60
22
12
39
25
1.89
45639--45677
19
2.2
19
90
9
64
53
2
0
43
1.14
45647--45717
32
2.2
33
83
14
87
63
5
0
30
1.17
46749--46797
21
2.3
21
82
6
55
22
4
4
69
1.23
46860--46885
12
2.2
12
100
0
52
26
0
0
73
0.84
48301--48344
21
2.0
22
86
4
63
27
27
25
20
1.99
48337--48366
11
2.7
11
94
0
51
33
26
10
30
1.89
48338--48371
11
3.1
11
91
0
50
32
20
11
35
1.89
48873--48947
24
3.2
24
72
11
73
33
24
22
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48879--48961
23
3.6
23
77
12
89
30
27
25
16
1.97
49185--49245
30
2.0
31
83
3
79
34
22
1
40
1.64
49556--49597
20
2.0
21
86
13
61
19
28
21
30
1.97
53920--54001
23
3.6
23
73
12
71
26
28
25
19
1.99

Tables:   1

The End!