Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01004490.1 Hibiscus syriacus cultivar Beakdansim tig00009899_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80502
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:3010 original size:56 final size:56
Alignment explanation
Indices: 2935--3043 Score: 182
Period size: 56 Copynumber: 1.9 Consensus size: 56
2925 CAATCCACTC
*
2935 TGAATTGCTTAACTTTCACATTCACTTCTGATCTAAAGTGACAACTTCAAGCACCA
1 TGAATTGCTTAACTTTCACATTCACTTCTCATCTAAAGTGACAACTTCAAGCACCA
* * *
2991 TGAATTGTTTAACTTTCACATTCACTTCTCTTCTAAAGTGACGACTTCAAGCA
1 TGAATTGCTTAACTTTCACATTCACTTCTCATCTAAAGTGACAACTTCAAGCA
3044 TACTCCAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.35
Consensus pattern (56 bp):
TGAATTGCTTAACTTTCACATTCACTTCTCATCTAAAGTGACAACTTCAAGCACCA
Found at i:6051 original size:15 final size:14
Alignment explanation
Indices: 6010--6047 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
6000 ATTTTACTTT
6010 TTTTATAATATTTAA
1 TTTTATAATA-TTAA
6025 TTATTATAATATTAA
1 TT-TTATAATATTAA
6040 TTTTATAA
1 TTTTATAA
6048 ATATAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.27
15 8 0.36
16 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TTTTATAATATTAA
Found at i:6064 original size:18 final size:18
Alignment explanation
Indices: 6038--6075 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6028 TTATAATATT
*
6038 AATTTTATAAATATA-AAA
1 AATTATATAAA-ATACAAA
6056 AATTATATAAAATACAAA
1 AATTATATAAAATACAAA
6074 AA
1 AA
6076 AATCCAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
AATTATATAAAATACAAA
Found at i:7076 original size:23 final size:23
Alignment explanation
Indices: 7020--7091 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
7010 AAAAAATCAT
*
7020 TAAAAA-TATAT-TACTTTATTAT
1 TAAAAATTATATATACTTT-TTAA
**
7042 TTTAAATT-TATATACTTTTTAA
1 TAAAAATTATATATACTTTTTAA
* *
7064 TAAAAATTATATATAATTTTTTA
1 TAAAAATTATATATACTTTTTAA
7087 TAAAA
1 TAAAA
7092 TTTAAAAGAT
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAAAATTATATATACTTTTTAA
Found at i:8894 original size:183 final size:182
Alignment explanation
Indices: 8610--9635 Score: 1441
Period size: 183 Copynumber: 5.6 Consensus size: 182
8600 ATACAAATGA
* * * * * * * *
8610 AAAATGGATCGACCCATAGCAATATTACAGGTACAAATATGATAAAACCGCTC-CCAAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* *
8674 AAACCGGTAAAACA-CTACCGGATATATGTCG--AGTGTCGATAATTTAATATAAGTATCGAAAC
66 AAACCGG-AAAA-AGCTACCGG--ATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACAC
*
8736 TTTCTGAATTTAAAAAAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
127 TTTCTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * *
8792 AAAATGTATCGATCCTTACCAATATAATATGTAAAAATATGATAAAAACAGGTCTCAAAAATGAC
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGAT-AAAACAGGTCTCAAAAATGAC
* * * * *
8857 AAAATCGGAAAAAGTTATCGGATATGTTAAAAGTGTCGATAATTTAATATAACTATCGACACTTT
65 AAAACCGGAAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* * *
8922 CTGAATTTAAAAGAGAAAAAGTTATTGCGCTTAAAAAGTGTCGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
8975 AAAATGTATTGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * * * *
9040 AAACCAGTAAAACGCTACCGGATATATTGAAAGTGCCGATAATTTAATATAAGTATCGAAACTTT
66 AAACC-GGAAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
* *
9105 CTGAATTTAAAAGAGAAGAAGTTATAACGTCTAAAAAGTGTCGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* *
9158 AAAATGTATCGATCCATAATAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATTGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * * * *
9223 AAACAAGTAAAACGCTACCGGATATATTGAAAGTGTCGATAATTTAATATTAGTATCGACACTTT
66 AAAC-CGGAAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTT
9288 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
130 CTGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * *
9341 AAAATGTATCGATCCTTACCAATATAACAGGTAAAAATATGATAAAATAGGTCTCAAAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* *
9406 AAACCGGAAAAAGTTACCGGATATGTTGAAAGTATCGATAATTTAATATAAGTATCGACACTTTC
66 AAACCGGAAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
* * *
9471 TGAATTTAAAAGATAAGAAGTTATAGCGCTTAAAAAGTGTTGACACTTTATG
131 TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
* * * *
9523 AAAATATATCGATCCAGAACAATATAACATGTAAAAATATGATAAAACCGGTCTC-AAAATGACA
1 AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
* * ** *
9587 AAACCGGTAAATAGATATTGGATATGTTGAAAGTGTCGATACTTTAATA
66 AAACCGG-AAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATA
9636 AGTACGCGTA
Statistics
Matches: 757, Mismatches: 79, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
181 22 0.03
182 247 0.33
183 472 0.62
184 16 0.02
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (182 bp):
AAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAAATGACA
AAACCGGAAAAAGCTACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCGACACTTTC
TGAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGACACTTTATG
Found at i:10046 original size:18 final size:19
Alignment explanation
Indices: 10023--10067 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
10013 TAGTTAATAT
10023 TTATAGGTA-AAAATGATA
1 TTATAGGTAGAAAATGATA
10041 TTATAGGTAGAAAATGATA
1 TTATAGGTAGAAAATGATA
*
10060 TTTTAGGT
1 TTATAGGT
10068 TGTATAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (19 bp):
TTATAGGTAGAAAATGATA
Found at i:10339 original size:18 final size:18
Alignment explanation
Indices: 10318--10356 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10308 TTGAAATGGT
10318 AATTGGATTA-AAACTTTA
1 AATT-GATTACAAACTTTA
*
10336 AATTGATTACAAATTTTA
1 AATTGATTACAAACTTTA
10354 AAT
1 AAT
10357 GTTGACAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (18 bp):
AATTGATTACAAACTTTA
Found at i:11368 original size:22 final size:22
Alignment explanation
Indices: 11317--11372 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
11307 AATGTTTTTG
*
11317 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
11340 TAATTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
11362 CTTTTATTATA
1 -TTTTATTATA
11373 AATCCAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:12056 original size:18 final size:18
Alignment explanation
Indices: 12033--12071 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
12023 GAAAAAATTT
* *
12033 GAAGAAGAGAATATGGAG
1 GAAGAAGAAAAGATGGAG
12051 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
12069 GAA
1 GAA
12072 ATGAGGAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:13570 original size:19 final size:19
Alignment explanation
Indices: 13544--13592 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
13534 AAATGCATGG
13544 TTAA-TTTGTATAAGATTT
1 TTAATTTTGTATAAGATTT
*
13562 TTAATTTTGTATACGATTT
1 TTAATTTTGTATAAGATTT
*
13581 ATAATTTTGTAT
1 TTAATTTTGTAT
13593 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TTAATTTTGTATAAGATTT
Found at i:14359 original size:199 final size:199
Alignment explanation
Indices: 13941--14832 Score: 1509
Period size: 199 Copynumber: 4.5 Consensus size: 199
13931 AACTTATGTG
* * **
13941 TCGATACATTTATAAGAAGTGTCGATCAAAAAAACATCGAAAACCATAATTATAATGTAATAGGT
1 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
* * *
14006 AAATTAGCAATATAACCGGTCTAAATATATC-AGTTTTTGAGAAAACAGGTGT-AAAACAGTATC
66 AGATTAGCAATATAACCGGTCTAAATATACCGA-TTTTTGAGAAAACAGGTGTAAAAAAAGTATC
14069 GACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAA
130 GACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAA
14134 AAGTA
195 AAGTA
*
14139 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCAAAAACCATAATTATAATGTAATAGGT
1 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
14204 AGATTAGCAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGGTGTAAAAAAAGTATCG
66 AGATTAGCAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGGTGTAAAAAAAGTATCG
*
14269 ACACAAATCGAACAAGTGTCGATACTTTTGGTCTAGAATGTATTTCAAAACCAAGTGCACTAAAA
131 ACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAA
14334 AGTA
196 AGTA
*
14338 TCGATACATTTGTAACAAGTGTCGATCCTAAAAACATCGAAAACCATAATTATAATGTAATAGGT
1 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
* * * * *
14403 AGATTAGCAATATAACCAGTCTAAATATACCGGTTTTTTAAAAAACAGATGTAAAAAAAGTATCG
66 AGATTAGCAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGGTGTAAAAAAAGTATCG
14468 ACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAA
131 ACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAA
*
14533 AGTG
196 AGTA
*
14537 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAATGTAATAGGT
1 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
* * *
14602 AGATTAGCAATATAACCGGTCTAAATATATCGGTTTTTGAGAAAACAAGTGTAAAAAAAGTATCG
66 AGATTAGCAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGGTGTAAAAAAAGTATCG
* * * *
14667 ACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTTTTTCAAAACCAAGTACACTAAAA
131 ACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAA
*
14732 AGTG
196 AGTA
* *
14736 TCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACTATAATTATAATGTAATAGGT
1 TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
*
14801 AGATTAGCAATATAACCAGTCTAAATATACCG
66 AGATTAGCAATATAACCGGTCTAAATATACCG
14833 GTTTAAATTG
Statistics
Matches: 659, Mismatches: 33, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
198 108 0.16
199 551 0.84
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (199 bp):
TCGATACATTTGTAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATAGGT
AGATTAGCAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAGGTGTAAAAAAAGTATCG
ACACAAATCGAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTAAAA
AGTA
Found at i:17651 original size:199 final size:198
Alignment explanation
Indices: 17024--18276 Score: 1874
Period size: 199 Copynumber: 6.3 Consensus size: 198
17014 ACAAATAAAT
* *
17024 AAGTGTCGATACATTTAAAACAAGTGTCGATCCTAAAAACATCGAAAAATATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* *
17089 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAGT
66 TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAAAGT
*
17154 ATCAACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
131 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
17219 TAA
196 TAA
* *
17222 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATTGAAAAACATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* *
17287 TTGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAAAGT
66 TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAAAGT
*
17352 ATCGACACAAATCAAGCAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCAC-
131 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
17416 TAAA
196 T-AA
* *
17420 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
*** * * * *
17485 TAGGTAAATTAAAAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAAGTGTACAAACAG
66 TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTA-AAAAAG
* *
17550 TATCGACACAAAT-AGAACAAGTATCGATACTTTAT-GTCCAGAATGTATTTCAGAAA-CAAGTG
130 TATCGACACAAATCA-AACAAGTGTCGATACTTT-TGGTCCAAAATGTATTTCA-AAACCAAGTG
17612 CACATAA
192 CACATAA
* *
17619 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAATATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
*
17684 TATGTAAATTATTCATATAAATC-GTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAAAA
66 TAGGTAAATTATTCATATAAA-CGGTCTAAATATACCGGTTTTTGAGAAAACATGTGT--AAAAA
*
17748 AGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTTCAAAATGTATTTCAAAACCAAGTGC
128 AGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGC
17813 ACATAA
193 ACATAA
* * *
17819 AAGTGTCGATACATTTAAAACAAATGTCGATCCCGAAAACATCGAAAAATATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* * *
17884 TAGGTAAATTATTCATGTAAACGATCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAG
66 TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGT-AAAAAAG
17949 TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCAC
130 TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCAC
18014 -TAAA
195 AT-AA
* *
18018 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
* *** * ** *
18083 TACGTAAATTAGAAATATAACCGGTCTAAATATATAGGTTTTTGAGAAAACATGTGTACAAACAG
66 TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTA-AAAAAG
* * * * *
18148 TATCGACACAAAT-AGAATAAGTGTCAATACTTTTTGTCCAGAATGTATTTCAGAACCAAGTGCA
130 TATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCA
*
18212 -AAACA
194 CATA-A
* * * *
18217 AAGTTTCGATACATTTATAACAATTGTCGATCCCAAAAACATCGAAACACATAATTATAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
18277 CCAAATGTCT
Statistics
Matches: 966, Mismatches: 71, Indels: 35
0.90 0.07 0.03
Matches are distributed among these distances:
197 1 0.00
198 304 0.31
199 475 0.49
200 184 0.19
201 2 0.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (198 bp):
AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
TAGGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAAAGT
ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
TAA
Found at i:17930 original size:399 final size:397
Alignment explanation
Indices: 17024--18276 Score: 1914
Period size: 399 Copynumber: 3.2 Consensus size: 397
17014 ACAAATAAAT
* *
17024 AAGTGTCGATACATTTAAAACAAGTGTCGATCCTAAAAACATCGAAAAATATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
17089 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAGT
66 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAGT
*
17154 ATCAACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
131 ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
*
17219 TAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATTGAAAAACATAATTATAATG
196 TAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATG
*
17284 TAAT-TGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGT-AAA
261 TAATAT-GTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAA
*
17347 AAAGTATCGACACAAATCAAGCAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGT
325 AAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGT
17412 GCAC-TAAA
390 GCACAT-AA
* *
17420 AAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
*** * * * * *
17485 TAGGTAAATTAAAAATATAACCGGTCTAAATATACCGATTTTTGAGAAAACAAGTGTACAAACAG
66 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTA-AAAAAG
* *
17550 TATCGACACAAAT-AGAACAAGTATCGATACTTTAT-GTCCAGAATGTATTTCAGAAA-CAAGTG
130 TATCGACACAAATCA-AACAAGTGTCGATACTTT-TGGTCCAAAATGTATTTCA-AAACCAAGTG
*
17612 CACATAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAATATAATTAT
192 CACATAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTAT
17677 AATGTAATATGTAAATTATTCATATAAATC-GTCTAAATATACCGGTTTTTGAGAAAACATGTGT
257 AATGTAATATGTAAATTATTCATATAAA-CGGTCTAAATATACCGGTTTTTGAGAAAACATGTGT
*
17741 AAAAAAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTTCAAAATGTATTTCAAAAC
321 -AAAAAAAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAAC
17806 CAAGTGCACATAA
385 CAAGTGCACATAA
* * *
17819 AAGTGTCGATACATTTAAAACAAATGTCGATCCCGAAAACATCGAAAAATATAATTATAATGTAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
*
17884 TAGGTAAATTATTCATGTAAACGATCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAAG
66 TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGT-AAAAAAG
17949 TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCAC
130 TATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCAC
* * *
18014 -TAAAAAGTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAA
195 AT-AAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAA
* *** * ** *
18078 TGTAATACGTAAATTAGAAATATAACCGGTCTAAATATATAGGTTTTTGAGAAAACATGTGTACA
259 TGTAATATGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAA
* * * * * *
18143 AACAGTATCGACACAAAT-AGAATAAGTGTCAATACTTTTTGTCCAGAATGTATTTCAGAACCAA
324 AAAAGTATCGACACAAATCA-AACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAA
*
18207 GTGCA-AAACA
388 GTGCACATA-A
* * * *
18217 AAGTTTCGATACATTTATAACAATTGTCGATCCCAAAAACATCGAAACACATAATTATAA
1 AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAA
18277 CCAAATGTCT
Statistics
Matches: 778, Mismatches: 62, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
396 113 0.15
397 181 0.23
398 129 0.17
399 352 0.45
400 3 0.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (397 bp):
AAGTGTCGATACATTTAAAACAAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAA
TAGGTAAATTATTCATGTAAACGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTAAAAAAGT
ATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTGCACA
TAAAAGTGTCGATACATTTAAAACAAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATG
TAATATGTAAATTATTCATATAAACGGTCTAAATATACCGGTTTTTGAGAAAACATGTGTAAAAA
AAGTATCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAAAATGTATTTCAAAACCAAGTG
CACATAA
Found at i:21456 original size:173 final size:176
Alignment explanation
Indices: 21070--21509 Score: 647
Period size: 173 Copynumber: 2.5 Consensus size: 176
21060 ATATGTTGAT
* * * *
21070 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATAAAACATGTAAAAAAATGACAAAAC
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAT
* *
21135 CGGTCT-ATAAATGACAATACAGGTAAAGCACTACCGGATATGTTGATAGTGTCGATACTTTATT
66 CGGTCTCA-AAATGACAAAACAGGTAAAGCAATACCGGATATGTTGATAG-GTCG-----TTATT
* *
21199 ATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCTAATAA
124 ATAAGTATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
* *
21252 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAATAGGTAACAATATGACAAAAT
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAT
*
21317 CGGTCTCAAAATGACAAAACTGGTAAAG-AGATACCGGATATGTTGATA-GT-G-TATTATAAGT
66 CGGTCTCAAAATGACAAAACAGGTAAAGCA-ATACCGGATATGTTGATAGGTCGTTATTATAAGT
21378 ATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
130 ATCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
21425 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAT
1 AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAT
* * *
21490 CGATATCGAAATGACAAAAC
66 CGGTCTCAAAATGACAAAAC
21510 CGATAGTAAA
Statistics
Matches: 240, Mismatches: 16, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
173 135 0.56
179 1 0.00
180 2 0.01
181 1 0.00
182 100 0.42
183 1 0.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (176 bp):
AGTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAATATGACAAAAT
CGGTCTCAAAATGACAAAACAGGTAAAGCAATACCGGATATGTTGATAGGTCGTTATTATAAGTA
TCGACACTTTTGGAATTTAAAAGAAAAGAAGTTATAGCGCCAATAA
Found at i:22163 original size:23 final size:23
Alignment explanation
Indices: 22134--22181 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
22124 AAATAGGTCA
*
22134 ATATAAGCGCTACATATTATATT
1 ATATAAGCGCTACATAATATATT
*
22157 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACATAATATATT
22180 AT
1 AT
22182 TGTACTTGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (23 bp):
ATATAAGCGCTACATAATATATT
Found at i:25116 original size:36 final size:36
Alignment explanation
Indices: 25069--25171 Score: 145
Period size: 36 Copynumber: 2.9 Consensus size: 36
25059 GGAAACGCCT
* *
25069 CAGATGCATGAGATATTTTGAAGAATAACTATACCC
1 CAGATGCATGAGATATTTAGAAGAATAACTATACCA
* *
25105 CAGATTCATGAGATATTTCGAAGAATAACTATACCA
1 CAGATGCATGAGATATTTAGAAGAATAACTATACCA
* *
25141 TAGATGCATTAGATATTTAGAAGAA-AACTAT
1 CAGATGCATGAGATATTTAGAAGAATAACTAT
25172 CTCCTGTAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
35 6 0.10
36 54 0.90
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.29
Consensus pattern (36 bp):
CAGATGCATGAGATATTTAGAAGAATAACTATACCA
Found at i:26981 original size:6 final size:6
Alignment explanation
Indices: 26970--27003 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
26960 TAAAAAGGTT
26970 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAA
27004 CAACTCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:39935 original size:19 final size:18
Alignment explanation
Indices: 39908--39947 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
39898 ATTTAAAAAT
* *
39908 TAAATTAATATGAATGAGA
1 TAAAATAATAT-AATGAAA
39927 TAAAATAATATAATGAAA
1 TAAAATAATATAATGAAA
39945 TAA
1 TAA
39948 GCAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (18 bp):
TAAAATAATATAATGAAA
Found at i:40096 original size:3 final size:3
Alignment explanation
Indices: 40025--40084 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
40015 ATATATATAT
40025 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
40072 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
40085 AACATATAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.04
3 54 0.96
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:40181 original size:16 final size:16
Alignment explanation
Indices: 40160--40194 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
40150 TTAAAAAAAC
* *
40160 AAAAGGACGAAATTAT
1 AAAAGGACAAAATAAT
40176 AAAAGGACAAAATAAT
1 AAAAGGACAAAATAAT
40192 AAA
1 AAA
40195 GCATAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.06, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAAGGACAAAATAAT
Found at i:42088 original size:134 final size:134
Alignment explanation
Indices: 41843--42200 Score: 576
Period size: 134 Copynumber: 2.7 Consensus size: 134
41833 GTTCGGGTCG
* * * * * *
41843 TCTAAGGGTGACACGGTTCCTACGTGATGAGGAAATCTGGTCGAGGGATGACACGACTCATACGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
41908 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGAC-GACT
66 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTG-CT
41972 GGTTA
130 GGTTA
* *
41977 TCTAGGGGTGACACGGCTCATACGCGATGAAGAGATCTAGTCGGGGGATGACACGACTCATACGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
*
42042 GATGAAGAGTTCTGGTCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
66 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
42107 GTTA
131 GTTA
* * *
42111 TCTAGGGGTGACACGGCTCATACGTGATGAAGTGATCTGGTC-GGGGATGACATGACTCATATGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
*
42175 GATGAAGAGTTTTGGCCATCTTTAGG
66 GATGAAGAGTTCTGGCCATCTTTAGG
42201 GATAATGATT
Statistics
Matches: 207, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
133 44 0.21
134 162 0.78
135 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (134 bp):
TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
GTTA
Found at i:42136 original size:43 final size:43
Alignment explanation
Indices: 41954--42140 Score: 118
Period size: 43 Copynumber: 4.2 Consensus size: 43
41944 ACTCGGTTCC
41954 TACGTGATGAGGAC-GACTGGTTATCTAGGGGTGACACGGCTCA
1 TACGTGATGAGGACTG-CTGGTTATCTAGGGGTGACACGGCTCA
* * * *
41997 TACGCGATGAAGAGA-T-CTAG---TC-GGGGGATGACACGACTCA
1 TACGTGATG-AG-GACTGCTGGTTATCTAGGGG-TGACACGGCTCA
* * * * * * *
42037 TACGTGATGAAGAGTTCTGGTCATCTTTAGGAAGGGTGATAACTCGGTTCC
1 TACGTGATGAGGACTGCTGGTTATC--TA-G--GGGTG---ACACGGCTCA
42088 TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
1 TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
42131 TACGTGATGA
1 TACGTGATGA
42141 AGTGATCTGG
Statistics
Matches: 107, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
38 2 0.02
39 6 0.06
40 24 0.22
43 30 0.28
44 2 0.02
45 2 0.02
46 5 0.05
47 1 0.01
48 3 0.03
49 5 0.05
51 27 0.25
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (43 bp):
TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
Found at i:42543 original size:29 final size:30
Alignment explanation
Indices: 42487--42543 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
42477 CAAAACTTTA
42487 TTTCAAAAGAAATAAACTCAAAGATTTTGG
1 TTTCAAAAGAAATAAACTCAAAGATTTTGG
*
42517 TTTCAAAAGAAAT-GACTCAAAGATTTT
1 TTTCAAAAGAAATAAACTCAAAGATTTT
42544 TTCATGAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 13 0.50
30 13 0.50
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.32
Consensus pattern (30 bp):
TTTCAAAAGAAATAAACTCAAAGATTTTGG
Found at i:42567 original size:91 final size:90
Alignment explanation
Indices: 42407--42633 Score: 264
Period size: 91 Copynumber: 2.5 Consensus size: 90
42397 GTTAAGAGAC
*
42407 ACAATCTCAAAG-A-TTTTTCAAAAGGAACAGACTCAAAGATTTTTCTCAAGAAAAACTGTCTCA
1 ACAAACTCAAAGAATTTTTTCAAAA-GAA-AGACTCAAAGATTTTTCTCAAG-AAAACTGTCTCA
*
42470 AGAGAGACAAAACTTTATTTCAAAAGAA
63 AGAGAGACAAAACTTTAGTTCAAAAGAA
* * * * *
42498 ATAAACTCAAAGATTTTGGTTTCAAAAGAAATGACTCAAAGATTTTT-TCATG-AAATTGTCTTA
1 ACAAACTCAAAGAATTT--TTTCAAAAGAAA-GACTCAAAGATTTTTCTCAAGAAAACTGTCTCA
*
42561 AGAGAGACAAAACTTTGGTTCAAAAGAA
63 AGAGAGACAAAACTTTAGTTCAAAAGAA
* * *
42589 ACAGACTCAAAGAATTTTTTCAAAAGAAACAAATCAAAGATTTTT
1 ACAAACTCAAAGAATTTTTTCAAAAGAAA-GACTCAAAGATTTTT
42634 ATTTCAAAAG
Statistics
Matches: 117, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
89 25 0.21
91 59 0.50
93 7 0.06
94 18 0.15
95 8 0.07
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (90 bp):
ACAAACTCAAAGAATTTTTTCAAAAGAAAGACTCAAAGATTTTTCTCAAGAAAACTGTCTCAAGA
GAGACAAAACTTTAGTTCAAAAGAA
Found at i:42647 original size:29 final size:29
Alignment explanation
Indices: 42579--42721 Score: 137
Period size: 29 Copynumber: 4.8 Consensus size: 29
42569 AAAACTTTGG
*
42579 TTCAAAAGAAACAGACTCAAAGA-ATTT-T
1 TTCAAAAGAAACA-ACTCAAAGATTTTTAT
*
42607 TTCAAAAGAAACAAATCAAAGATTTTTAT
1 TTCAAAAGAAACAACTCAAAGATTTTTAT
* * *
42636 TTCAAAAGAAACAACTCACAGACTTTTGT
1 TTCAAAAGAAACAACTCAAAGATTTTTAT
* *
42665 TTCAAGAGAAACAAACACAAAGATAGGTTTTAT
1 TTCAAAAGAAAC-AACTCAAAGAT---TTTTAT
**
42698 TTCAAGTGAAACAATCTCAAAGAT
1 TTCAAAAGAAACAA-CTCAAAGAT
42722 GTTTGTTTTA
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
27 8 0.08
28 16 0.17
29 37 0.39
30 8 0.08
32 2 0.02
33 24 0.25
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.27
Consensus pattern (29 bp):
TTCAAAAGAAACAACTCAAAGATTTTTAT
Found at i:42701 original size:33 final size:33
Alignment explanation
Indices: 42659--42721 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
42649 ACTCACAGAC
*
42659 TTTTGTTTCAAGAGAAACAAACACAAAGATAGG
1 TTTTATTTCAAGAGAAACAAACACAAAGATAGG
* * *
42692 TTTTATTTCAAGTGAAACAATCTCAAAGAT
1 TTTTATTTCAAGAGAAACAAACACAAAGAT
42722 GTTTGTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (33 bp):
TTTTATTTCAAGAGAAACAAACACAAAGATAGG
Found at i:42900 original size:64 final size:63
Alignment explanation
Indices: 42734--42922 Score: 199
Period size: 64 Copynumber: 3.0 Consensus size: 63
42724 TTGTTTTAAG
** * * *
42734 AGAAA-TTGTCTCAAAAGAGACAAACCTTTGTTTTCATAA-AAACAAACTTAAAGATTTTTCTTC
1 AGAAACTT-TCTCAAAAGAGACAAAATTTTGTTATCA-AAGAAACATACTCAAAGA--TTT-TTC
42797 AAA
61 AAA
* * **
42800 AGGAACTATCTCAAAAGAGAC--AATTTT-TTCCCCAAAGAAACATACTCAAAGATTATTTCAAA
1 AGAAACTTTCTCAAAAGAGACAAAATTTTGTT-ATCAAAGAAACATACTCAAAGATT-TTTCAAA
42862 AGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCAAAGAAACATACTCAAAGATTTTTCA
1 AGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCAAAGAAACATACTCAAAGATTTTTCA
42923 TTTTGTTTTA
Statistics
Matches: 104, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
62 27 0.26
63 10 0.10
64 47 0.45
65 2 0.02
66 17 0.16
67 1 0.01
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (63 bp):
AGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCAAAGAAACATACTCAAAGATTTTTCAAA
Found at i:42926 original size:36 final size:36
Alignment explanation
Indices: 42886--42958 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
42876 AAGAGACAAA
*
42886 ATTTTGTTATCA-AAGAAACATACTCAAAGATTTTTC
1 ATTTTGTT-TCAGAAGAAACAGACTCAAAGATTTTTC
* **
42922 ATTTTGTTTTAGGTGAAACAGACTCAAAGATTTTTC
1 ATTTTGTTTCAGAAGAAACAGACTCAAAGATTTTTC
42958 A
1 A
42959 ATAAAATCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 2 0.06
36 30 0.94
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (36 bp):
ATTTTGTTTCAGAAGAAACAGACTCAAAGATTTTTC
Found at i:42980 original size:99 final size:100
Alignment explanation
Indices: 42836--43015 Score: 247
Period size: 99 Copynumber: 1.8 Consensus size: 100
42826 TTTCCCCAAA
* ** *
42836 GAAACATACTCAAAGATTATTTCAAAAGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCAAAG
1 GAAACAGACTCAAAGATTATTTCAAAAGAAACCGTCTCAAAAGAGACAAAATTTTGTTATAAAAG
*
42901 AAACATACTCAAAGATTTTTCATTTTGTTTTAGGT
66 AAACAGACTCAAAGATTTTTCATTTTGTTTTAGGT
* * * *
42936 GAAACAGACTCAAAGATT-TTTCAATAA-AATCCGTCTCAAGAGAGACAAAGTTTTGTTTTAAAA
1 GAAACAGACTCAAAGATTATTTCAA-AAGAAACCGTCTCAAAAGAGACAAAATTTTGTTATAAAA
*
42999 GAAATAGACTCAAAGAT
65 GAAACAGACTCAAAGAT
43016 CCTTTGTTTC
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
99 50 0.72
100 19 0.28
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (100 bp):
GAAACAGACTCAAAGATTATTTCAAAAGAAACCGTCTCAAAAGAGACAAAATTTTGTTATAAAAG
AAACAGACTCAAAGATTTTTCATTTTGTTTTAGGT
Found at i:43041 original size:30 final size:31
Alignment explanation
Indices: 42987--43045 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
42977 GAGACAAAGT
*
42987 TTTGTTTTAAAAGAAATAGACTCAAAGATCC
1 TTTGTTTCAAAAGAAATAGACTCAAAGATCC
43018 TTTGTTTCAAAAGAAAT-GACTCAAAGAT
1 TTTGTTTCAAAAGAAATAGACTCAAAGAT
43046 GATGTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (31 bp):
TTTGTTTCAAAAGAAATAGACTCAAAGATCC
Found at i:43121 original size:36 final size:36
Alignment explanation
Indices: 43081--43184 Score: 147
Period size: 36 Copynumber: 2.9 Consensus size: 36
43071 TCATAATTTG
43081 GAAATTGTCTCAAGTGAGACAACATTTGTTTTTAGA
1 GAAATTGTCTCAAGTGAGACAACATTTGTTTTTAGA
** * *
43117 GAAATTGTCTCAAACGAGACAAAAATTGTTTTTAGA
1 GAAATTGTCTCAAGTGAGACAACATTTGTTTTTAGA
43153 GAAATTGATCTCAAGTGAGATCAAC-TTTGTTT
1 GAAATTG-TCTCAAGTGAGA-CAACATTTGTTT
43185 AATGTGAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 39 0.67
37 16 0.28
38 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.35
Consensus pattern (36 bp):
GAAATTGTCTCAAGTGAGACAACATTTGTTTTTAGA
Found at i:43313 original size:107 final size:105
Alignment explanation
Indices: 43160--43472 Score: 364
Period size: 107 Copynumber: 3.0 Consensus size: 105
43150 AGAGAAATTG
*
43160 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAAACAAATTCGAAATTTGTATTCTCAAAGGAAA
1 ATCTCAAGTGAGATCAACTTTGTTTAATGTG-AAACAAATTTGAAATTTGTA-TCTCAAAGGAAA
*
43225 AATGTCTCAAACGAGACGAAATTTGTTTTGAAAAAAATAACA
64 AATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
* * * *
43267 ATCTCAAGTGAGATTAATTTTTGTTTCAA-GTGAATCAAATTTGAAATTTGTATATCAAAGGAAA
1 ATCTCAAGTGAGATCAA-CTTTGTTT-AATGTGAAACAAATTTGAAATTTGTATCTCAAAGG-AA
* * * * ***
43331 AAATGTCTCAAGCAAGACGAAGTTTGTTTT-AAGAGAA-AGTG
63 AAATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
* * * *
43372 ATCTTAACTGAGATCAACTTTGTTTAATGTGAAACAAA-TTCAAATTTTGTATCTTAAAGGAAAA
1 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTTGAAA-TTTGTATCTCAAAGGAAAA
* * *
43436 ATGTCTCAAGTGAGATGAAATTTGTTTTGAAAGAAAT
65 ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAAT
43473 TGTCTCAAGC
Statistics
Matches: 171, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
103 35 0.20
104 33 0.19
105 15 0.09
106 13 0.08
107 63 0.37
108 10 0.06
109 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (105 bp):
ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTTGAAATTTGTATCTCAAAGGAAAAA
TGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
Found at i:43518 original size:35 final size:35
Alignment explanation
Indices: 43431--43543 Score: 129
Period size: 36 Copynumber: 3.2 Consensus size: 35
43421 TATCTTAAAG
* **
43431 GAAAAATGTCTCAAGTGAGATGAAATTTGTTTTGA
1 GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTGA
*
43466 -AAGAAATTGTCTCAAGCGAGACAAAATTTGTTTTTA
1 GAA-AAA-TGTCTCAAGCGAGACAAAATTTGTTTTGA
* **
43502 GAAAACTGTCTCAAGCGAGACAAAATTTTGTTTCAA
1 GAAAAATGTCTCAAGCGAGACAAAA-TTTGTTTTGA
43538 GAAAAA
1 GAAAAA
43544 CACCCTCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
34 2 0.03
35 22 0.33
36 40 0.61
37 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (35 bp):
GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTGA
Found at i:49358 original size:19 final size:18
Alignment explanation
Indices: 49331--49370 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
49321 ATTTAAAAAT
* *
49331 TAAATTAATATGAATGAGA
1 TAAAATAATAT-AATGAAA
49350 TAAAATAATATAATGAAA
1 TAAAATAATATAATGAAA
49368 TAA
1 TAA
49371 GCAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (18 bp):
TAAAATAATATAATGAAA
Found at i:49426 original size:2 final size:2
Alignment explanation
Indices: 49421--49455 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
49411 ACACACATAA
* *
49421 AT AT AT AT AT AC AT AA AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
49456 ATAAAACATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:49436 original size:16 final size:16
Alignment explanation
Indices: 49415--49447 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
49405 AATTAAACAC
49415 ACATAAATATATATAT
1 ACATAAATATATATAT
49431 ACATAAATATATATAT
1 ACATAAATATATATAT
49447 A
1 A
49448 TATATATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
ACATAAATATATATAT
Found at i:50132 original size:29 final size:29
Alignment explanation
Indices: 50098--50155 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
50088 AAAAAATGCC
50098 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
1 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
*
50127 TAGCCTCCCCTTGTTGAAACGTTGTCGCA
1 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
50156 CAACAGATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.29
Consensus pattern (29 bp):
TAGCCTCCCCTTGTTGAAACGGTGTCGCA
Found at i:51754 original size:79 final size:79
Alignment explanation
Indices: 51623--51770 Score: 251
Period size: 79 Copynumber: 1.9 Consensus size: 79
51613 GTGAAAGGAC
*
51623 GAGACTTATGTGGAGCGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
1 GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
51688 ACCAGTTTTATCGG
66 ACCAGTTTTATCGG
* ** *
51702 GAGACTTATGTGGATAGGAACTTCTAAAGTTGAGTGATCAAATTGAAATTTTTTAAAGTTTAGTG
1 GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
51767 ACCA
66 ACCA
51771 AAACAGGAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 64 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (79 bp):
GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
ACCAGTTTTATCGG
Found at i:53283 original size:144 final size:144
Alignment explanation
Indices: 53088--53535 Score: 524
Period size: 144 Copynumber: 3.1 Consensus size: 144
53078 TCGATCCCCC
* * * * * * *
53088 CTTCTATCGGAAATTTAACCGACTTATTTCAACTTGTCCTTTTTGAA-AATAAAATTTCGGGGTC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTT-AACAATAAAATATCGGGGTC
* * *
53152 CATACCAAAAGAAATCGGAATGCTAGGTTCCCTTTCATG-GCTTTATTTGTTCAATAATAGTATT
65 CATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACA-GAGCTTTATTTGTACAATAATAGTATT
*
53216 TCCGGTGAAATTCCTG
129 ACCGGTGAAATTCCTG
* *
53232 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTCACCTTTTTAACAATAAAATCTCGGGGTCC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
* * * *
53297 ATACCGAAAGAAATTGGAATGAT-GAGTTCCCTTACAGAGCTTTATTTGTCCAATAATCGTATTA
66 ATACCAAAAGAAATTGGAATGCTAG-GTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTA
* *
53361 CCGGTAAAATCCCTG
130 CCGGTGAAATTCCTG
* * * ** * **
53376 TTTCTATTGGAAACTCAACCAACTTGTCTTTTCTTGAACTTTTCGACAATAAAATATCGGGGTCC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
* * * * * * * *
53441 ATGCCTAAAGAAATTGGGATGCTAGGTTCTCTTACAGAGCTTTGTTTGAACAATAATAATCTTAC
66 ATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTAC
*
53506 CGGTGAAATTCCCG
131 CGGTGAAATTCCTG
53520 CTTCTATTGGAAACTT
1 CTTCTATTGGAAACTT
53536 GACGGGCTTG
Statistics
Matches: 257, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
143 4 0.02
144 252 0.98
145 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (144 bp):
CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
ATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTAC
CGGTGAAATTCCTG
Found at i:61488 original size:4 final size:4
Alignment explanation
Indices: 61479--61503 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
61469 TGATGTCTTT
61479 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
61504 AAAATTGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:61738 original size:16 final size:18
Alignment explanation
Indices: 61714--61750 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
61704 AACGTTTTTT
*
61714 AAAACAATTT-TAAGA-A
1 AAAAAAATTTATAAGACA
61730 AAAAAAATTTATAAGACA
1 AAAAAAATTTATAAGACA
61748 AAA
1 AAA
61751 TTTGGTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 9 0.50
17 5 0.28
18 4 0.22
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.22
Consensus pattern (18 bp):
AAAAAAATTTATAAGACA
Found at i:62373 original size:19 final size:18
Alignment explanation
Indices: 62346--62385 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
62336 ATTTAAAAAT
* *
62346 TAAATTAATATGAATGAGA
1 TAAAATAATAT-AATGAAA
62365 TAAAATAATATAATGAAA
1 TAAAATAATATAATGAAA
62383 TAA
1 TAA
62386 GCAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (18 bp):
TAAAATAATATAATGAAA
Found at i:62497 original size:3 final size:3
Alignment explanation
Indices: 62450--62485 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
62440 ATATATATAT
62450 ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
62486 AACATATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:62582 original size:16 final size:16
Alignment explanation
Indices: 62561--62595 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
62551 TTAAAAAAAC
* *
62561 AAAAGGACGAAATTAT
1 AAAAGGACAAAATAAT
62577 AAAAGGACAAAATAAT
1 AAAAGGACAAAATAAT
62593 AAA
1 AAA
62596 GCATAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.06, G:0.14, T:0.14
Consensus pattern (16 bp):
AAAAGGACAAAATAAT
Found at i:64471 original size:134 final size:134
Alignment explanation
Indices: 64226--64583 Score: 567
Period size: 134 Copynumber: 2.7 Consensus size: 134
64216 GTTCGGGTCG
* * * * * * *
64226 TCTAAGGGTGACATGGTTCCTACGTGATGAGGAAATCTGGTCGAGGGATGACACGACTCATACGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
64291 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGAC-GACT
66 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTG-CT
64355 GGTTA
130 GGTTA
* *
64360 TCTAGGGGTGACACGGCTCATACGCGATGAAGAGATCTAGTCGGGGGATGACACGACTCATACGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
*
64425 GATGAAGAGTTCTGGTCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
66 GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
64490 GTTA
131 GTTA
* * *
64494 TCTAGGGGTGACACGGCTCATACGTGATGAAGTGATCTGGTC-GGGGATGACACGAATCATATGT
1 TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
*
64558 GATGAAGAGTTTTGGCCATCTTTAGG
66 GATGAAGAGTTCTGGCCATCTTTAGG
64584 GATAATGATT
Statistics
Matches: 206, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
133 44 0.21
134 161 0.78
135 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (134 bp):
TCTAGGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGGATGACACGACTCATACGT
GATGAAGAGTTCTGGCCATCTTTAGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACTGCTG
GTTA
Found at i:64519 original size:43 final size:43
Alignment explanation
Indices: 64337--64523 Score: 118
Period size: 43 Copynumber: 4.2 Consensus size: 43
64327 ACTCGGTTCC
64337 TACGTGATGAGGAC-GACTGGTTATCTAGGGGTGACACGGCTCA
1 TACGTGATGAGGACTG-CTGGTTATCTAGGGGTGACACGGCTCA
* * * *
64380 TACGCGATGAAGAGA-T-CTAG---TC-GGGGGATGACACGACTCA
1 TACGTGATG-AG-GACTGCTGGTTATCTAGGGG-TGACACGGCTCA
* * * * * * *
64420 TACGTGATGAAGAGTTCTGGTCATCTTTAGGAAGGGTGATAACTCGGTTCC
1 TACGTGATGAGGACTGCTGGTTATC--TA-G--GGGTG---ACACGGCTCA
64471 TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
1 TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
64514 TACGTGATGA
1 TACGTGATGA
64524 AGTGATCTGG
Statistics
Matches: 107, Mismatches: 19, Indels: 36
0.66 0.12 0.22
Matches are distributed among these distances:
38 2 0.02
39 6 0.06
40 24 0.22
43 30 0.28
44 2 0.02
45 2 0.02
46 5 0.05
47 1 0.01
48 3 0.03
49 5 0.05
51 27 0.25
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (43 bp):
TACGTGATGAGGACTGCTGGTTATCTAGGGGTGACACGGCTCA
Found at i:64925 original size:29 final size:30
Alignment explanation
Indices: 64870--65071 Score: 120
Period size: 29 Copynumber: 6.8 Consensus size: 30
64860 CAAAACTTTA
64870 TTTCAAAAGAAACAAACTCAAAGATTTTGG
1 TTTCAAAAGAAACAAACTCAAAGATTTTGG
**
64900 TTTCAAAAGAAA-TGACTCAAAGA-TTT--
1 TTTCAAAAGAAACAAACTCAAAGATTTTGG
* * * ** *
64926 TTTCATGAAATTGTCTTAAGAGAGACAAA-ACTTTGG
1 TTTCA--AAA--G---AAACAAACTCAAAGATTTTGG
* *
64962 -TTCAAAAGAAACAGACTCAAAGAATTT--
1 TTTCAAAAGAAACAAACTCAAAGATTTTGG
**
64989 TTTCAAAAGAAACAAA-TCAAAGATTTTTA
1 TTTCAAAAGAAACAAACTCAAAGATTTTGG
*
65018 TTTCAAAAGAAAC-AACTCACAGACTTTT-G
1 TTTCAAAAGAAACAAACTCAAAGA-TTTTGG
* *
65047 TTTCAAGAGAAACAAACACAAAGAT
1 TTTCAAAAGAAACAAACTCAAAGAT
65072 AGGTTTTATT
Statistics
Matches: 136, Mismatches: 18, Indels: 37
0.71 0.09 0.19
Matches are distributed among these distances:
26 5 0.04
27 10 0.07
28 31 0.23
29 45 0.33
30 25 0.18
31 1 0.01
33 6 0.04
34 9 0.07
35 4 0.03
ACGTcount: A:0.47, C:0.14, G:0.12, T:0.27
Consensus pattern (30 bp):
TTTCAAAAGAAACAAACTCAAAGATTTTGG
Found at i:64950 original size:91 final size:90
Alignment explanation
Indices: 64790--65016 Score: 264
Period size: 91 Copynumber: 2.5 Consensus size: 90
64780 GTTAAGAGAC
*
64790 ACAATCTCAAAG-A-TTTTTCAAAAGGAACAGACTCAAAGATTTTTCTCAAGAAAAACTGACTCA
1 ACAAACTCAAAGAATTTTTTCAAAA-GAA-AGACTCAAAGATTTTTCTCAAG-AAAACTGACTCA
*
64853 AGAGAGACAAAACTTTATTTCAAAAGAA
63 AGAGAGACAAAACTTTAGTTCAAAAGAA
* * * * *
64881 ACAAACTCAAAGATTTTGGTTTCAAAAGAAATGACTCAAAGATTTTT-TCATG-AAATTGTCTTA
1 ACAAACTCAAAGAATTT--TTTCAAAAGAAA-GACTCAAAGATTTTTCTCAAGAAAACTGACTCA
*
64944 AGAGAGACAAAACTTTGGTTCAAAAGAA
63 AGAGAGACAAAACTTTAGTTCAAAAGAA
* * *
64972 ACAGACTCAAAGAATTTTTTCAAAAGAAACAAATCAAAGATTTTT
1 ACAAACTCAAAGAATTTTTTCAAAAGAAA-GACTCAAAGATTTTT
65017 ATTTCAAAAG
Statistics
Matches: 118, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
89 25 0.21
91 60 0.51
93 7 0.06
94 18 0.15
95 8 0.07
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (90 bp):
ACAAACTCAAAGAATTTTTTCAAAAGAAAGACTCAAAGATTTTTCTCAAGAAAACTGACTCAAGA
GAGACAAAACTTTAGTTCAAAAGAA
Found at i:64993 original size:28 final size:29
Alignment explanation
Indices: 64962--65103 Score: 126
Period size: 29 Copynumber: 4.8 Consensus size: 29
64952 AAAACTTTGG
*
64962 TTCAAAAGAAACAGACTCAAAGA-ATTT-T
1 TTCAAAAGAAACA-ACTCAAAGACTTTTAT
* *
64990 TTCAAAAGAAACAAATCAAAGATTTTTAT
1 TTCAAAAGAAACAACTCAAAGACTTTTAT
* *
65019 TTCAAAAGAAACAACTCACAGACTTTTGT
1 TTCAAAAGAAACAACTCAAAGACTTTTAT
* * *
65048 TTCAAGAGAAACAAACACAAAGATAGGTTTTAT
1 TTCAAAAGAAAC-AACTCAAAG--A-CTTTTAT
**
65081 TTCAAGTGAAACAATCTCAAAGA
1 TTCAAAAGAAACAA-CTCAAAGA
65104 TGTTTGTTTT
Statistics
Matches: 94, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
27 8 0.09
28 16 0.17
29 37 0.39
30 7 0.07
31 1 0.01
32 3 0.03
33 22 0.23
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (29 bp):
TTCAAAAGAAACAACTCAAAGACTTTTAT
Found at i:65084 original size:33 final size:33
Alignment explanation
Indices: 65042--65104 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
65032 ACTCACAGAC
*
65042 TTTTGTTTCAAGAGAAACAAACACAAAGATAGG
1 TTTTATTTCAAGAGAAACAAACACAAAGATAGG
* * *
65075 TTTTATTTCAAGTGAAACAATCTCAAAGAT
1 TTTTATTTCAAGAGAAACAAACACAAAGAT
65105 GTTTGTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (33 bp):
TTTTATTTCAAGAGAAACAAACACAAAGATAGG
Found at i:65258 original size:61 final size:60
Alignment explanation
Indices: 65117--65304 Score: 202
Period size: 63 Copynumber: 3.0 Consensus size: 60
65107 TTGTTTTAAG
* *
65117 AGAAA-TTGTCTCAAAAGAGACAAACCTTTGTTTTCATAA-AAACAGACTTAAAGATTTTTCTTC
1 AGAAACTT-TCTCAAAAGAGACAAA--TTT-TTTTCA-AAGAAACATACTCAAAGA--TTT-TTC
65180 AAA
58 AAA
* *
65183 AGGAACTATCTCAAAAGAGAC-AATTTTTTTCCAAAGAAACATACTCAAAGATTATTTCAAA
1 AGAAACTTTCTCAAAAGAGACAAATTTTTTT-CAAAGAAACATACTCAAAGATT-TTTCAAA
65244 AGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCAAAGAAACATACTCAAAGATTTTTCA
1 AGAAACTTTCTCAAAAGAGAC-AAATTTT-TT-TCAAAGAAACATACTCAAAGATTTTTCA
65305 TTTTGTTTTA
Statistics
Matches: 108, Mismatches: 6, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
61 27 0.25
62 7 0.06
63 29 0.27
64 24 0.22
65 3 0.03
66 17 0.16
67 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (60 bp):
AGAAACTTTCTCAAAAGAGACAAATTTTTTTCAAAGAAACATACTCAAAGATTTTTCAAA
Found at i:65308 original size:36 final size:36
Alignment explanation
Indices: 65268--65338 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
65258 AAGAGACAAA
*
65268 ATTTTGTTATCA-AAGAAACATACTCAAAGATTTTTC
1 ATTTTGTT-TCAGAAGAAACAGACTCAAAGATTTTTC
* **
65304 ATTTTGTTTTAGGTGAAACAGACTCAAAGATTTTT
1 ATTTTGTTTCAGAAGAAACAGACTCAAAGATTTTT
65339 TAATAAAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 2 0.07
36 28 0.93
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (36 bp):
ATTTTGTTTCAGAAGAAACAGACTCAAAGATTTTTC
Found at i:65308 original size:99 final size:99
Alignment explanation
Indices: 65216--65397 Score: 213
Period size: 99 Copynumber: 1.8 Consensus size: 99
65206 TTTTTTTCCA
* ** *
65216 AAGAAACATACTCAAAGATTATTTCAA-AAGAAACTTTCTCAAAAGAGACAAAATTTTGTTATCA
1 AAGAAACAGACTCAAAGATT-TTTCAATAA-AAACCGTCTCAAAAGAGACAAAATTTTGTTATAA
* *
65280 AAGAAACATACTCAAAGATTTTTCATTTTGTTTTAG
64 AAGAAACAGACTCAAAGATTTTTCATTTTGTTTCAG
** * * * * *
65316 GTGAAACAGACTCAAAGATTTTTTAATAAAATCCGTCTCAAGAGAGACAAAGTTTTGTTTTAAAA
1 AAGAAACAGACTCAAAGATTTTTCAATAAAAACCGTCTCAAAAGAGACAAAATTTTGTTATAAAA
*
65381 GAAATAGACTCAAAGAT
66 GAAACAGACTCAAAGAT
65398 CCTTTGTTTC
Statistics
Matches: 68, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
99 49 0.72
100 19 0.28
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (99 bp):
AAGAAACAGACTCAAAGATTTTTCAATAAAAACCGTCTCAAAAGAGACAAAATTTTGTTATAAAA
GAAACAGACTCAAAGATTTTTCATTTTGTTTCAG
Found at i:65423 original size:30 final size:31
Alignment explanation
Indices: 65369--65427 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
65359 GAGACAAAGT
*
65369 TTTGTTTTAAAAGAAATAGACTCAAAGATCC
1 TTTGTTTCAAAAGAAATAGACTCAAAGATCC
65400 TTTGTTTCAAAAGAAAT-GACTCAAAGAT
1 TTTGTTTCAAAAGAAATAGACTCAAAGAT
65428 GATGTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (31 bp):
TTTGTTTCAAAAGAAATAGACTCAAAGATCC
Found at i:65505 original size:36 final size:36
Alignment explanation
Indices: 65465--65567 Score: 145
Period size: 36 Copynumber: 2.8 Consensus size: 36
65455 ATAATTTGGA
65465 AAATTGTCTCAAGTGAGACAACATTTGTTTTTAGAG
1 AAATTGTCTCAAGTGAGACAACATTTGTTTTTAGAG
** * *
65501 AAATTGTCTCAAACGAGACAAAAATTGTTTTTAGAG
1 AAATTGTCTCAAGTGAGACAACATTTGTTTTTAGAG
65537 AAATTGATCTCAAGTGAGATCAAC-TTTGTTT
1 AAATTG-TCTCAAGTGAGA-CAACATTTGTTT
65568 AATGTGAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 38 0.67
37 16 0.28
38 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (36 bp):
AAATTGTCTCAAGTGAGACAACATTTGTTTTTAGAG
Found at i:65696 original size:107 final size:105
Alignment explanation
Indices: 65543--65855 Score: 373
Period size: 107 Copynumber: 3.0 Consensus size: 105
65533 AGAGAAATTG
*
65543 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAAACAAATTCGAAATTTGTATTCTCAAAGGAAA
1 ATCTCAAGTGAGATCAACTTTGTTTAATGTG-AAACAAATTTGAAATTTGTA-TCTCAAAGGAAA
*
65608 AATGTCTCAAACGAGACGAAATTTGTTTTGAAAAAAATAACA
64 AATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
* * * *
65650 ATCTCAAGTGAGATTAATTTTTGTTTCAA-GTGAATCAAATTTGAAATTTGTATATCAAAGGAAA
1 ATCTCAAGTGAGATCAA-CTTTGTTT-AATGTGAAACAAATTTGAAATTTGTATCTCAAAGG-AA
* * * * ***
65714 AAATGTCTCAAGCAAGACGAAGTTTGTTTT-AAGAGAA-AGTG
63 AAATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
* * *
65755 ATCTCAACTGAGATCAACTTTGTTTAATGTGAAACAAA-TTCAAATTTTGTATCTTAAAGGAAAA
1 ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTTGAAA-TTTGTATCTCAAAGGAAAA
* * *
65819 ATGTCTCAAGTGAGATGAAATTTGTTTTGAAAGAAAT
65 ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAAT
65856 TGTCTCAAGC
Statistics
Matches: 172, Mismatches: 27, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
103 35 0.20
104 33 0.19
105 16 0.09
106 13 0.08
107 63 0.37
108 10 0.06
109 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (105 bp):
ATCTCAAGTGAGATCAACTTTGTTTAATGTGAAACAAATTTGAAATTTGTATCTCAAAGGAAAAA
TGTCTCAAGCGAGACGAAATTTGTTTTGAAAAAAATAACA
Found at i:65901 original size:35 final size:35
Alignment explanation
Indices: 65814--65926 Score: 129
Period size: 36 Copynumber: 3.2 Consensus size: 35
65804 TATCTTAAAG
* **
65814 GAAAAATGTCTCAAGTGAGATGAAATTTGTTTTGA
1 GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTGA
*
65849 -AAGAAATTGTCTCAAGCGAGACAAAATTTGTTTTTA
1 GAA-AAA-TGTCTCAAGCGAGACAAAATTTGTTTTGA
* **
65885 GAAAACTGTCTCAAGCGAGACAAAATTTTGTTTCAA
1 GAAAAATGTCTCAAGCGAGACAAAA-TTTGTTTTGA
65921 GAAAAA
1 GAAAAA
65927 CACCCTCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
34 2 0.03
35 22 0.33
36 40 0.61
37 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (35 bp):
GAAAAATGTCTCAAGCGAGACAAAATTTGTTTTGA
Found at i:66227 original size:16 final size:16
Alignment explanation
Indices: 66193--66232 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
66183 CTCATGTAAT
** *
66193 ATGTATGTATGTGTTG
1 ATGTATGTATGCATCG
66209 ATGTATGTATGCATCG
1 ATGTATGTATGCATCG
66225 ATGTATGT
1 ATGTATGT
66233 TTTCTCGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.23, C:0.05, G:0.28, T:0.45
Consensus pattern (16 bp):
ATGTATGTATGCATCG
Found at i:71717 original size:19 final size:18
Alignment explanation
Indices: 71690--71729 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
71680 ATTTAAAAAT
* *
71690 TAAATTAATATGAATGAGA
1 TAAAATAATAT-AATGAAA
71709 TAAAATAATATAATGAAA
1 TAAAATAATATAATGAAA
71727 TAA
1 TAA
71730 GCAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (18 bp):
TAAAATAATATAATGAAA
Found at i:71785 original size:2 final size:2
Alignment explanation
Indices: 71780--71826 Score: 76
Period size: 2 Copynumber: 23.5 Consensus size: 2
71770 ACACACATAA
* *
71780 AT AT AT AT AC AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71822 AT AT A
1 AT AT A
71827 ATAAAACATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:71791 original size:14 final size:14
Alignment explanation
Indices: 71774--71826 Score: 70
Period size: 14 Copynumber: 3.8 Consensus size: 14
71764 AATTAAACAC
71774 ACATAAATATATAT
1 ACATAAATATATAT
71788 ACATAAATATATAT
1 ACATAAATATATAT
* *
71802 ATATATATATATAT
1 ACATAAATATATAT
* *
71816 ATATATATATA
1 ACATAAATATA
71827 ATAAAACATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (14 bp):
ACATAAATATATAT
Found at i:72507 original size:29 final size:29
Alignment explanation
Indices: 72469--72555 Score: 165
Period size: 29 Copynumber: 3.0 Consensus size: 29
72459 AAAAAATGCC
72469 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
1 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
72498 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
1 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
*
72527 TAGCCTCCCCTTGTTGAAACGTTGTCGCA
1 TAGCCTCCCCTTGTTGAAACGGTGTCGCA
72556 CAATAGATGG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 57 1.00
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (29 bp):
TAGCCTCCCCTTGTTGAAACGGTGTCGCA
Found at i:73460 original size:3 final size:3
Alignment explanation
Indices: 73452--73495 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
73442 TAATATATTA
* *
73452 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAA ACAC AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AA
73496 AAAATTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 2 0.05
3 33 0.89
4 2 0.05
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:73470 original size:15 final size:15
Alignment explanation
Indices: 73451--73498 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
73441 GTAATATATT
73451 AAATAATAATAATAA
1 AAATAATAATAATAA
*
73466 TAATAATAATAA-AA
1 AAATAATAATAATAA
*
73480 AACACAATAATAATAA
1 AA-ATAATAATAATAA
73496 AAA
1 AAA
73499 ATTAAAATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 3 0.11
15 21 0.75
16 4 0.14
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.23
Consensus pattern (15 bp):
AAATAATAATAATAA
Found at i:74159 original size:79 final size:79
Alignment explanation
Indices: 74028--74175 Score: 242
Period size: 79 Copynumber: 1.9 Consensus size: 79
74018 GTGAAAGGAC
* *
74028 GAGACTTATGTGGAGCGGAACTTCTAAAGTCAAGTGATCAAATTGAATTTTTTTAAAATTTAGTG
1 GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
74093 ACCAGTTTTATCGG
66 ACCAGTTTTATCGG
* ** *
74107 GAGACTTATGTGGATAGGAACTTCTAAAGTTGAGTGATCAAATTGAAATTTTTTAAAGTTTAGTG
1 GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
74172 ACCA
66 ACCA
74176 AAACAGGAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (79 bp):
GAGACTTATGTGGAGAGGAACTTCTAAAGTCAAGTGATCAAATTGAAATTTTTTAAAATTTAGTG
ACCAGTTTTATCGG
Found at i:75688 original size:144 final size:144
Alignment explanation
Indices: 75493--75939 Score: 524
Period size: 144 Copynumber: 3.1 Consensus size: 144
75483 TCGATCCCCC
* * * * * *
75493 CTTCTATTGGAAATTTAACCGACTTATTTCAACTTGTCCTTTTTGAA-AATAAAATTTCGGGGTC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTT-AACAATAAAATATCGGGGTC
* * *
75557 CATACCAAAAGAAATCGGAATGCTAGGTTCCCTTTCATG-GCTTTATTTGTTCAATAATAGTATT
65 CATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACA-GAGCTTTATTTGTACAATAATAGTATT
*
75621 TCCGGTGAAATTCCTG
129 ACCGGTGAAATTCCTG
* *
75637 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTCACCTTTTTAACAATAAAATCTCGGGGTCC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
* * *
75702 ATACCGAAAGAAATTGGAATGAT-GAGTTCCCTTACAGAGCTTTATTTGTCCAATAATAGTATTA
66 ATACCAAAAGAAATTGGAATGCTAG-GTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTA
* *
75766 CCGGTAAAATCCCTG
130 CCGGTGAAATTCCTG
* * * ** * **
75781 TTTCTATTGGAAACTCAACCAACTTGTCTTTTCTTGAACTTTTCGACAATAAAA-ATCGGGGTCC
1 CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
* * * * * * * * *
75845 ATGCCTAAAGAAATTGGGATGCTAGGTTCTCTTACAGAGCTTTGTTTGAACAACAATAATCTTAC
66 ATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTAC
*
75910 CGGTGAAATTCCCG
131 CGGTGAAATTCCTG
75924 CTTCTATTGGAAACTT
1 CTTCTATTGGAAACTT
75940 GACGGGCTTG
Statistics
Matches: 258, Mismatches: 41, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
143 90 0.35
144 168 0.65
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (144 bp):
CTTCTATTGGAAACTTAACCAACTTATCTCATCTTGACCTTTTTAACAATAAAATATCGGGGTCC
ATACCAAAAGAAATTGGAATGCTAGGTTCCCTTACAGAGCTTTATTTGTACAATAATAGTATTAC
CGGTGAAATTCCTG
Done.