genome.fa.s4491.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004491.1 Hibiscus syriacus cultivar Beakdansim tig00009902_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69717

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752--787	12	3.0	12	88	12	56	66	0	0	33	0.92
8569--8671	36	2.9	36	92	2	163	31	5	12	50	1.64
11800--11882	30	2.8	30	78	5	80	60	25	9	4	1.48
21864--21964	31	3.2	31	70	22	102	26	4	7	60	1.45
21862--21985	63	2.0	63	96	0	230	29	4	8	58	1.48
25310--26075	198	3.8	198	80	5	846	32	16	13	37	1.88
26076--26115	15	2.7	15	88	0	53	37	7	17	37	1.78
26386--26437	11	4.5	11	77	13	59	46	9	7	36	1.66
29120--29402	148	1.9	148	84	4	383	35	14	12	38	1.83
29249--29633	200	1.9	200	90	2	621	35	13	12	38	1.82
29899--29947	19	2.6	19	96	0	89	57	10	0	32	1.32
31726--31788	33	1.9	33	96	0	117	23	46	0	30	1.53
31822--31886	21	3.1	21	95	0	112	13	35	10	40	1.80
32007--32040	9	3.8	9	88	0	50	11	52	8	26	1.67
34265--35227	182	5.3	182	92	1	1507	27	17	14	40	1.88
34265--35465	364	3.4	362	89	3	1706	27	17	14	40	1.88
35058--35389	162	2.0	162	92	0	556	29	17	13	39	1.88
38722--38773	20	2.6	20	90	0	86	38	25	13	23	1.91
38829--39022	20	9.6	20	76	8	76	35	25	19	19	1.95
38825--39022	40	5.0	39	81	4	200	35	26	19	19	1.95
38829--39021	60	3.2	60	83	0	251	35	25	19	19	1.95
39402--39472	33	2.2	33	92	0	115	11	22	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39593--39647	14	3.6	14	73	21	56	41	23	25	9	1.83
39593--39663	33	2.2	33	94	0	124	43	25	22	8	1.81
39659--39756	19	5.7	19	70	22	81	10	24	22	42	1.84
39681--39770	14	5.7	14	74	23	81	8	25	23	42	1.83
39664--39778	33	3.5	33	95	0	212	9	24	20	45	1.81
41472--42027	178	3.0	180	95	4	976	22	12	18	46	1.83
41472--42027	93	6.1	93	95	4	1026	22	12	18	46	1.83
42071--42199	19	7.3	19	75	17	125	45	28	16	9	1.78
42107--42199	33	2.8	32	91	4	150	46	27	17	8	1.77
42071--42199	52	2.5	52	74	14	140	45	28	16	9	1.78
42195--42329	19	7.6	19	73	16	119	11	18	23	46	1.81
42217--42273	14	3.7	14	77	20	60	10	19	22	47	1.80
42200--42292	33	2.8	33	91	0	159	10	19	21	48	1.79
44255--44290	14	2.6	14	95	0	63	33	0	22	44	1.53
44397--44498	19	5.6	19	84	13	151	44	17	23	14	1.86
44505--44833	33	9.5	33	78	14	217	14	20	17	46	1.84
44527--44833	19	17.4	19	79	16	367	14	20	17	46	1.83
44527--44766	71	3.4	71	84	11	364	15	20	17	47	1.83
44489--44833	142	2.5	137	89	5	507	15	20	17	46	1.84
44527--44805	52	5.2	52	92	4	379	14	21	16	46	1.83
47114--47138	12	2.1	12	100	0	50	0	28	0	72	0.86
47313--47359	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48042--48410	20	18.5	20	86	4	458	20	18	26	34	1.96
51494--51539	24	1.9	24	82	8	58	54	8	0	36	1.32
57998--58042	21	2.1	21	87	0	63	33	26	24	15	1.95
58598--58644	2	23.5	2	100	0	94	51	0	0	48	1.00
59294--59371	31	2.5	31	85	4	95	21	20	23	34	1.97
59317--59419	31	3.4	31	87	2	118	22	19	24	33	1.97
59344--59446	30	3.4	30	90	2	145	22	19	26	32	1.97
66958--66997	21	1.9	21	89	0	62	25	40	25	10	1.86

Tables:   1

The End!